View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15196_low_2 (Length: 435)
Name: NF15196_low_2
Description: NF15196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15196_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 43699802 - 43699400
Alignment:
| Q |
16 |
atgatactattgcattatttatgtgttaggaatgtcatgtgcacacgttgctgtagtcgtggcatataagaatcaaaacgataaagataatggcaaatag |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43699802 |
atgatactattacattatttatgtgttaggaatgtcatgtgcacacgttgctgtaatcgtggcatataagaatcaaaacgataaagataatggcaaagag |
43699703 |
T |
|
| Q |
116 |
ttgttgatgtcgactctgtcatcaaaacaaaaaagatgtcggtcgactctttggctttttgaactggttgtgtaacttgtgctagaaaacagaattttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699702 |
ttgttgatgtcgactctgtcatcaaaacaaaaaagatgtcggtcgactctttggctttttgaactggttgtgtaacttgtgctagaaaacagaattttgg |
43699603 |
T |
|
| Q |
216 |
acgagacataatttaaattctctaaaacaatctgcaccgttaatttaatctaacggttttaacttgaacattcggatatcgagatttcagattttcacaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699602 |
acgagacataatttaaattctctaaaacaatctgcaccgttaatttaatccaacggttttaacttgaacattcggatatcgagatttcagattttcacaa |
43699503 |
T |
|
| Q |
316 |
taaactattataaacatgttacttaaagattttagaaaattcgattctccgcgacgacgcgacaccggcgatgggagcatcaacttcttcggaaacagtt |
415 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699502 |
taaactattataaac-tgttacttgtagattttagaaaattcgattctccgcgacgacgcgacaccggcgatgggagcatcaacttcttcggaaacagtt |
43699404 |
T |
|
| Q |
416 |
tctg |
419 |
Q |
| |
|
|||| |
|
|
| T |
43699403 |
tctg |
43699400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 39526187 - 39526253
Alignment:
| Q |
350 |
gaaaattcgattctccgcgacgacgcgacaccggcgatgggagcatcaacttcttcggaaacagttt |
416 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
39526187 |
gaaaattcgattttccgcgacgacgcgacaccggcaatgggagcattaacttcgtcggaaacagttt |
39526253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University