View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15196_low_3 (Length: 361)

Name: NF15196_low_3
Description: NF15196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15196_low_3
NF15196_low_3
[»] chr2 (5 HSPs)
chr2 (17-346)||(13370469-13370800)
chr2 (41-101)||(31475891-31475951)
chr2 (17-106)||(23389214-23389301)
chr2 (44-102)||(24544011-24544068)
chr2 (41-101)||(19012173-19012232)
[»] chr3 (2 HSPs)
chr3 (17-108)||(17132797-17132888)
chr3 (69-125)||(1085763-1085819)
[»] chr7 (2 HSPs)
chr7 (44-99)||(14628688-14628743)
chr7 (147-227)||(22969721-22969800)
[»] chr1 (4 HSPs)
chr1 (42-96)||(4521512-4521566)
chr1 (17-76)||(11110750-11110809)
chr1 (147-227)||(21880825-21880904)
chr1 (28-89)||(11821937-11821996)
[»] chr8 (5 HSPs)
chr8 (17-108)||(5892693-5892782)
chr8 (17-104)||(22454631-22454716)
chr8 (17-62)||(28862428-28862473)
chr8 (45-101)||(27814842-27814899)
chr8 (58-102)||(27662348-27662392)
[»] scaffold0608 (1 HSPs)
scaffold0608 (17-76)||(6187-6246)
[»] chr4 (2 HSPs)
chr4 (69-129)||(18553436-18553497)
chr4 (17-106)||(12424861-12424946)
[»] scaffold0431 (1 HSPs)
scaffold0431 (17-106)||(5029-5114)
[»] chr6 (2 HSPs)
chr6 (42-101)||(3634427-3634487)
chr6 (17-101)||(24154084-24154166)
[»] scaffold0270 (2 HSPs)
scaffold0270 (51-87)||(8180-8216)
scaffold0270 (51-87)||(15310-15346)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 13370469 - 13370800
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacat-aagaaaaataactgcaaagatcaacgg 115  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  13370469 actttgagtgttaaaattctataataatgatttctgacccattttttctatcaaaaactactatttatacatgaaaaaaaataactgcaaagatcaacgg 13370568  T
Q  116 caagaaactacattcctt-tacatcttctgtttgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttc 214  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13370569 ctagaaactacattccttctacatcttctgtttgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtcttttaaaggcttc 13370668  T
Q  215 tccagtcgaaaactgcatcttctctgatcgaagtcttcatcagtcaaagtcttcacctgtcgaagtccttccttgtcgaaacccacattttctctttgga 314  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13370669 tccagtcgaaaactgcatcttctctggtcgaagtcttcatcagtcaaagtcttcacatgtcgaagtccttccttgtcgaaacccacattttctctttgga 13370768  T
Q  315 cttagaaaatcctgcaatcttgtatttttctt 346  Q
    ||||||||||||||||||||||||||||||||    
T  13370769 cttagaaaatcctgcaatcttgtatttttctt 13370800  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 31475891 - 31475951
Alignment:
Q  41 taatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataact 101  Q
    ||||||||| |||||| ||||| |||| |||||||||||| ||||||| ||||||||||||    
T  31475891 taatgatttgtgacccttttttcctatgaaaaactactatatatacattagaaaaataact 31475951  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 23389214 - 23389301
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgcaaa 106  Q
    |||||||||| ||||||| |||||  ||||||| |||||||||||| |||| ||||| || |||||||||||   | |||||||||||||    
T  23389214 actttgagtgctagaattttataa--atgatttgtgacccgtttttcctatgaaaaattattatttatacatcgaagaaataactgcaaa 23389301  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 24544011 - 24544068
Alignment:
Q  44 tgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactg 102  Q
    |||||| |||||||||||| ||||  ||||||||||||||||||| || ||||||||||    
T  24544011 tgatttgtgacccgtttttcctatggaaaactactatttatacat-agtaaaataactg 24544068  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 19012173 - 19012232
Alignment:
Q  41 taatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataact 101  Q
    ||||||||| |||||| |||||  ||| |||||||||||| | ||||||||||||||||||    
T  19012173 taatgatttgtgaccc-tttttcatatgaaaaactactatatgtacataagaaaaataact 19012232  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 17132797 - 17132888
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgcaaaga 108  Q
    ||||| |||| |||||||||||||||||||||| ||| |||||||| |||| |||||||||||| ||||||||   ||||||||||||||||    
T  17132797 actttcagtgctagaattctataataatgatttgtgaaccgtttttcctatgaaaaactactatatatacatagagaaaataactgcaaaga 17132888  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 1085763 - 1085819
Alignment:
Q  69 aaaaactactatttatacataagaaaaataactgcaaagatcaacggcaagaaacta 125  Q
    |||||||||||| |||||| ||||||||||||| || ||| ||||||  ||||||||    
T  1085763 aaaaactactatatatacacaagaaaaataactacacagaccaacggtcagaaacta 1085819  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 14628743 - 14628688
Alignment:
Q  44 tgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataa 99  Q
    |||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  14628743 tgatttgtgaccctttttttctatgaaaaactactatatatacataagaaaaataa 14628688  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 22969800 - 22969721
Alignment:
Q  147 tgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttctccagtcgaaaac 227  Q
    ||||| |||| ||||||||||||||||||||||| ||| |  ||||||||||||| | |||||| ||||| |||| |||||    
T  22969800 tgttttccacatgtctgaaccttcaaacttgccttttcagcaagaattcaaagtc-tacaaaggtttctctagtcaaaaac 22969721  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 4521566 - 4521512
Alignment:
Q  42 aatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaa 96  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||    
T  4521566 aatgatttgtgacccgttttttctatgaaaaactactatatatacacaagaaaaa 4521512  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 11110750 - 11110809
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaacta 76  Q
    ||||||||| |||||||||| ||||| |||||| |||||||||||| |||| ||||||||    
T  11110750 actttgagttttagaattctgtaatagtgatttgtgacccgtttttcctatgaaaaacta 11110809  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 21880825 - 21880904
Alignment:
Q  147 tgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttctccagtcgaaaac 227  Q
    ||||| |||| ||||||||||||||||||||||| ||| |  ||||||||||||| | |||||| ||||| |||| |||||    
T  21880825 tgttttccacatgtctgaaccttcaaacttgccttttcagcaagaattcaaagtc-tacaaaggtttctctagtcaaaaac 21880904  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 11821937 - 11821996
Alignment:
Q  28 tagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacata 89  Q
    |||||||||||||  || |||| |||||||||||| |||| |||||||| ||||||||||||    
T  11821937 tagaattctataa--ataatttgtgacccgtttttcctataaaaaactattatttatacata 11821996  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 5892693 - 5892782
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgcaaaga 108  Q
    |||| ||||| |||||||||||||  ||||||| ||||||||||||  ||| |||||||||||| ||||||||   |||||||||| |||||    
T  5892693 acttcgagtgctagaattctataa--atgatttgtgacccgtttttcatatgaaaaactactatatatacatagtgaaaataactgaaaaga 5892782  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 22454716 - 22454631
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgca 104  Q
    |||||||||| |||||||||||||   ||||||  ||||| |||||  ||| |||||||||||| |||||||| ||||||||||||||    
T  22454716 actttgagtgctagaattctataag--tgatttgcgacccatttttcttatgaaaaactactatatatacataggaaaaataactgca 22454631  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28862473 - 28862428
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttt 62  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||    
T  28862473 actttgagtgctagaattctataataatgatttgtgacccattttt 28862428  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 27814899 - 27814842
Alignment:
Q  45 gatttatgacccgttttttctatcaaaaactactatttatacataaga-aaaataact 101  Q
    |||||||||||| ||||| ||||  ||||||||||| ||||||||||| |||||||||    
T  27814899 gatttatgacccctttttcctatggaaaactactatatatacataagagaaaataact 27814842  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 27662348 - 27662392
Alignment:
Q  58 ttttttctatcaaaaactactatttatacataagaaaaataactg 102  Q
    ||||| |||| | |||||||||| |||||||||||||||||||||    
T  27662348 tttttcctatgacaaactactatatatacataagaaaaataactg 27662392  T

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Target: scaffold0608 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 6187 - 6246
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaacta 76  Q
    ||||||||| |||||||||| ||||| |||||| |||||||||||| |||| ||||||||    
T  6187 actttgagttttagaattctgtaatagtgatttgtgacccgtttttcctatgaaaaacta 6246  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 18553436 - 18553497
Alignment:
Q  69 aaaaactactatttatacata-agaaaaataactgcaaagatcaacggcaagaaactacatt 129  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||| || |||||| |||||    
T  18553436 aaaaactactatatatacatagagaaaaataactacaaagatcaactgctagaaaccacatt 18553497  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 12424861 - 12424946
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgcaaa 106  Q
    |||| ||||||||||||||||||    ||||||  ||||||||||| |||| |||||||| ||||||||||||  | |||||||| ||||    
T  12424861 acttcgagtgttagaattctata----tgatttgcgacccgtttttcctatgaaaaactattatttatacatagaagaaataactacaaa 12424946  T

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Target: scaffold0431 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 5114 - 5029
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataactgcaaa 106  Q
    |||| ||||||||||||||||||    ||||||  ||||||||||| |||| |||||||| ||||||||||||  | |||||||| ||||    
T  5114 acttcgagtgttagaattctata----tgatttgcgacccgtttttcctatgaaaaactattatttatacatagaagaaataactacaaa 5029  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 3634427 - 3634487
Alignment:
Q  42 aatgatttatgacccgttttttctatcaaaaactactatttatacataaga-aaaataact 101  Q
    |||||||| |||||||||||| |||| |||||||||||| ||| ||||||| |||||||||    
T  3634427 aatgatttgtgacccgtttttcctatgaaaaactactatatatgcataagagaaaataact 3634487  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 24154166 - 24154084
Alignment:
Q  17 actttgagtgttagaattctataataatgatttatgacccgttttttctatcaaaaactactatttatacataagaaaaataact 101  Q
    |||| ||||| |||||||||| ||  |||||||  |||| |||||| |||| |||||||| |||||||||||| || ||||||||    
T  24154166 acttcgagtgctagaattctacaa--atgatttgcgacctgtttttcctataaaaaactattatttatacataggagaaataact 24154084  T

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Target: scaffold0270 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 8180 - 8216
Alignment:
Q  51 tgacccgttttttctatcaaaaactactatttataca 87  Q
    ||||||||||||||||  |||||||||||||||||||    
T  8180 tgacccgttttttctaagaaaaactactatttataca 8216  T

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Target: scaffold0270; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 15310 - 15346
Alignment:
Q  51 tgacccgttttttctatcaaaaactactatttataca 87  Q
    ||||||||||||||||  |||||||||||||||||||    
T  15310 tgacccgttttttctaagaaaaactactatttataca 15346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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