View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15196_low_6 (Length: 224)

Name: NF15196_low_6
Description: NF15196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15196_low_6
NF15196_low_6
[»] chr6 (2 HSPs)
chr6 (52-210)||(12197085-12197243)
chr6 (117-155)||(8317708-8317746)
[»] chr7 (2 HSPs)
chr7 (48-203)||(6372979-6373123)
chr7 (117-155)||(7942287-7942325)
[»] scaffold0044 (1 HSPs)
scaffold0044 (117-155)||(47069-47107)
[»] chr8 (3 HSPs)
chr8 (117-155)||(199888-199926)
chr8 (117-155)||(314725-314763)
chr8 (117-155)||(30408007-30408045)
[»] chr5 (4 HSPs)
chr5 (117-155)||(7101578-7101616)
chr5 (117-155)||(12021204-12021242)
chr5 (117-155)||(16796584-16796622)
chr5 (117-155)||(37679951-37679989)
[»] chr4 (1 HSPs)
chr4 (117-155)||(44149473-44149511)
[»] chr3 (2 HSPs)
chr3 (117-155)||(43552207-43552245)
chr3 (117-155)||(54169548-54169586)
[»] chr2 (2 HSPs)
chr2 (117-155)||(8053307-8053345)
chr2 (117-155)||(36672966-36673004)
[»] chr1 (1 HSPs)
chr1 (117-155)||(26313928-26313966)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 12197085 - 12197243
Alignment:
Q  52 accttcaaatgactgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12197085 accttcaaatgactgacatatggttttctacctgaccaaacctcttcaggcacttgattcttcaatttcttagtgggacatctatttaagatgtaagctg 12197184  T
Q  152 cagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagtataatc 210  Q
    || |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  12197185 caatattccctactttaccccaaaattcatgaggtagcttcttctctatcagcataatc 12197243  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 8317708 - 8317746
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8317708 tttcttagtgggacatctgtttaagatgtatgctgcagt 8317746  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 6372979 - 6373123
Alignment:
Q  48 aaacaccttcaaatgactgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaa 147  Q
    ||||| ||||||||||||||   ||||||||||||| ||||||||||||||||  ||||||||||||||||||||           |||||||||| |||    
T  6372979 aaacatcttcaaatgactgattgatggttttctacccgaccaaacctcttcaggaacttgattcttcaatttctt-----------tatttaagatataa 6373067  T
Q  148 gctgcagtattccctactttaccccaaaattcaagaggaagcttcttctctatcag 203  Q
    ||| |||||||| || ||| |||||| |||||| |||| ||||| |||||| ||||    
T  6373068 gctacagtattcactgcttcaccccagaattcatgaggtagctttttctctttcag 6373123  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 7942287 - 7942325
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7942287 tttcttagtgggacatctgtttaagatgtatgctgcagt 7942325  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 47069 - 47107
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  47069 tttcttagtgggacatctgtttaagatgtatgctgcagt 47107  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 199888 - 199926
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  199888 tttcttagtgggacatctgtttaagatgtatgctgcagt 199926  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 314725 - 314763
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  314725 tttcttagtgggacatctgtttaagatgtatgctgcagt 314763  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 30408007 - 30408045
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  30408007 tttcttagtgggacatctgtttaagatgtatgctgcagt 30408045  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 7101578 - 7101616
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7101578 tttcttagtgggacatctgtttaagatgtatgctgcagt 7101616  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 12021242 - 12021204
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  12021242 tttcttagtgggacatctgtttaagatgtatgctgcagt 12021204  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 16796622 - 16796584
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  16796622 tttcttagtgggacatctgtttaagatgtatgctgcagt 16796584  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 37679989 - 37679951
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  37679989 tttcttagtgggacatctgtttaagatgtatgctgcagt 37679951  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 44149511 - 44149473
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  44149511 tttcttagtgggacatctgtttaagatgtatgctgcagt 44149473  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 43552245 - 43552207
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  43552245 tttcttagtgggacatctgtttaagatgtatgctgcagt 43552207  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 54169548 - 54169586
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  54169548 tttcttagtgggacatctgtttaagatgtatgctgcagt 54169586  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 8053345 - 8053307
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8053345 tttcttagtgggacatctgtttaagatgtatgctgcagt 8053307  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 36673004 - 36672966
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  36673004 tttcttagtgggacatctgtttaagatgtatgctgcagt 36672966  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 26313966 - 26313928
Alignment:
Q  117 tttcttagtgggacatctatttaagatgtaagctgcagt 155  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  26313966 tttcttagtgggacatctgtttaagatgtatgctgcagt 26313928  T

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