View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15197_high_2 (Length: 617)

Name: NF15197_high_2
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15197_high_2
NF15197_high_2
[»] chr7 (7 HSPs)
chr7 (13-600)||(13304221-13304810)
chr7 (13-171)||(28008844-28009006)
chr7 (35-163)||(7066740-7066869)
chr7 (54-113)||(26926635-26926694)
chr7 (35-155)||(12309600-12309721)
chr7 (34-98)||(5282264-5282328)
chr7 (52-100)||(28066402-28066450)
[»] chr8 (5 HSPs)
chr8 (13-169)||(22843284-22843443)
chr8 (30-169)||(32108890-32109030)
chr8 (29-169)||(12785166-12785315)
chr8 (35-127)||(24629922-24630015)
chr8 (59-117)||(26140282-26140340)
[»] chr5 (6 HSPs)
chr5 (29-155)||(37396801-37396928)
chr5 (29-165)||(7576087-7576224)
chr5 (38-136)||(16418101-16418200)
chr5 (54-155)||(10975898-10976000)
chr5 (54-100)||(15798097-15798143)
chr5 (43-81)||(26604613-26604651)
[»] chr1 (7 HSPs)
chr1 (13-155)||(26793405-26793551)
chr1 (29-155)||(27799755-27799882)
chr1 (37-81)||(39899880-39899924)
chr1 (60-100)||(15471672-15471712)
chr1 (59-117)||(48706929-48706987)
chr1 (59-100)||(21760408-21760449)
chr1 (52-100)||(11789163-11789211)
[»] chr3 (8 HSPs)
chr3 (29-169)||(29788228-29788369)
chr3 (29-155)||(29634898-29635025)
chr3 (29-169)||(20409755-20409896)
chr3 (49-172)||(4812233-4812355)
chr3 (59-144)||(17370908-17370994)
chr3 (52-169)||(17267307-17267425)
chr3 (16-81)||(3162575-3162639)
chr3 (60-155)||(55390799-55390895)
[»] chr2 (5 HSPs)
chr2 (13-155)||(5306437-5306583)
chr2 (52-113)||(28746973-28747034)
chr2 (45-81)||(37059057-37059093)
chr2 (35-113)||(18332692-18332770)
chr2 (59-100)||(26617493-26617534)
[»] chr4 (3 HSPs)
chr4 (29-169)||(44100566-44100707)
chr4 (29-169)||(12227470-12227611)
chr4 (40-127)||(31931690-31931778)
[»] chr6 (7 HSPs)
chr6 (29-169)||(23607938-23608080)
chr6 (35-155)||(14095729-14095850)
chr6 (16-78)||(22962421-22962483)
chr6 (16-78)||(23825910-23825972)
chr6 (59-127)||(5973050-5973119)
chr6 (59-127)||(8711003-8711072)
chr6 (59-99)||(3097533-3097573)
[»] scaffold0294 (1 HSPs)
scaffold0294 (13-169)||(1102-1263)
[»] scaffold0591 (1 HSPs)
scaffold0591 (45-171)||(2694-2821)
[»] scaffold0027 (1 HSPs)
scaffold0027 (59-100)||(36811-36852)
[»] scaffold0121 (1 HSPs)
scaffold0121 (60-100)||(5496-5536)


Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 13 - 600
Target Start/End: Original strand, 13304221 - 13304810
Alignment:
13 aaaataatgatacaacataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
13304221 aaaataatgatacaacataatactacctaaacatcttcatctggccgaatcaaactcttgataatatcttcaggcgatctcatcaacgaagcatccattt 13304320  T
113 cgatc-tcgggaacattctgtgctgaccaaatatcgagaacatgttccacacgtcgtcattttatctcagtggacaagtgtcattgagatacagagatgt 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
13304321 cgatcgtcgggaacattctgtgctgaccaaatatcgagaacatgttccccacatcgtcattttatctcagtggacaagtgtcattgagatacagagatgt 13304420  T
212 ctcaactttctctaagtaaactattttctaaaagactannnnnnnnnnnnnnnnnnn-caccgtacatgagtaattttaaccatgaaatctcttgttaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||    
13304421 ctcaactttctctaagtaaactattttctaaaagactattttttttcatttcttttttcaccgtacatgagtaattttaaccatgaaatctcttgttaaa 13304520  T
311 aatattatctcaatggacacaagtgacatcgaacatgtacacacttatgctatctggtagcagaccagatttcgacaattaaacagttgcgagagtgaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13304521 aatattatctcaatggacacaagtgacatcgaacatgtacacacttatgctatctggtagcagaccagatttcgacaattaaacagttgcgagagtgaat 13304620  T
411 cgtttttgcgcaggccaacctgcatttgactctaaaaagatcaaatctgacttcgataccactcgatctttagcactgacaagaggatggaaaccacttt 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
13304621 cgtttttgcgcaggccaacctgcatttgactctaaaaagatcaaatctgacttcgataccactcgatctttagcactgacaagaggatgggaaccacttt 13304720  T
511 gataagaaatagtgtttcaattctagaatcagcataaagaagccataacatggaatatgcattaatgccatcaccaagtacctacagttc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13304721 gataagaaatagtgtttcaattctagaatcagcataaagaagccataacatggaatatgcattaatgccatcaccaagtacctacagttc 13304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 28009006 - 28008844
Alignment:
13 aaaataatgatacaacat---aatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatcca 109  Q
    |||||||||| |||||||   ||||| |||||||||||||||||||||| || ||||||||||||| ||||| |||  ||||||| |||| || |||| |    
28009006 aaaataatgacacaacattttaatacaacctaaacatcttcatctggccaaagcaaactcttgagagtatcttcagaagatctcagcaacaaaacatcaa 28008907  T
110 tctcgatc-tcgggaacattctgtgctgaccaaatatcgagaacatgttccacacgtcgtcat 171  Q
     ||||||| ||| ||||||  |||||||||||||||||||||||||| ||| |||||||||||    
28008906 actcgatcgtcgagaacatgatgtgctgaccaaatatcgagaacatgatcctcacgtcgtcat 28008844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 7066869 - 7066740
Alignment:
35 ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtg 133  Q
    ||||||||||||  || | |||| ||||||| ||||| ||||||| | |||||||||||| ||||| ||| |||||||| || ||| ||||||| | |||    
7066869 ctacctaaacataatcttgtggcagaatcaagctcttaagaatatattcaggcgatctcagcaacgtagcttccatctcaatcctcaggaacatgcggtg 7066770  T
134 ctgaccaaatatcgagaacatgttccacac 163  Q
    ||||| | |||| ||||||||| |||||||    
7066769 ctgacgatatatggagaacatgctccacac 7066740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 26926694 - 26926635
Alignment:
54 tggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctc 113  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||    
26926694 tggcagaatcaaactcttgagaatatcttcaggcgatctcatcaatgcagcttccatctc 26926635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 12309600 - 12309721
Alignment:
35 ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtg 133  Q
    ||||||||||||  || | |||| ||||||||||||||||||||||| || ||||||||| ||||   || |||||||| || ||||||||||| | |||    
12309600 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcatgcgatctcagcaacctggcttccatctcaatcctcgggaacatgcggtg 12309699  T
134 ctgaccaaatatcgagaacatg 155  Q
    ||||| | |||  |||||||||    
12309700 ctgacgatatacggagaacatg 12309721  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 5282264 - 5282328
Alignment:
34 actacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaa 98  Q
    |||||||||||||  |  |||||| |||||||||  |||||||||||| ||||||||||||||||    
5282264 actacctaaacataattttctggcagaatcaaaccgttgagaatatcttcaggcgatctcatcaa 5282328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 28066450 - 28066402
Alignment:
52 tctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||||| |||||||||| |||||||||||| ||| |||||||| |||||    
28066450 tctggcggaatcaaacttttgagaatatcttcagacgatctcagcaacg 28066402  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 22843284 - 22843443
Alignment:
13 aaaataatgatacaacata--atactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccat 110  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||  ||| ||||||||||    
22843284 aaaataatgacacaacatataatactacctaaacatcttcgtctggccgaatcaaactcttgagaataacttcaggcgatctcaaaaacaaagcatccat 22843383  T
111 ctcgatc-tcgggaacattctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
    ||||||| |||| |||||  ||||||||||||| |||||||||||| ||| || ||||||    
22843384 ctcgatcgtcggaaacatgttgtgctgaccaaacatcgagaacatgctcctcaagtcgtc 22843443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 32108890 - 32109030
Alignment:
30 taatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacatt 128  Q
    |||||| |||||||||| |||||||| |||||||||||||||| |||||||| |||  ||||||| ||||||| |||||| ||||||| ||| ||||||     
32108890 taatacaacctaaacattttcatctgtccgaatcaaactcttgcgaatatcttcagaagatctcagcaacgaaacatccaactcgatcgtcgagaacatg 32108989  T
129 ctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
    | ||||||||||||||||||||||||| ||| |||||||||    
32108990 ccgtgctgaccaaatatcgagaacatgctcctcacgtcgtc 32109030  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 12785166 - 12785315
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaa--------cgaagcatccatctcgatc-tc 119  Q
    |||||| ||||||||||||||||||| | |||||||||||||||  ||||||| |||| ||||| | |||        |||||||| || ||||||| ||    
12785166 ataatattacctaaacatcttcatctagtcgaatcaaactcttgttaatatcttcaggtgatctaagcaatgaacagacgaagcattcacctcgatcatc 12785265  T
120 gggaacattctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
    ||||||||  ||||||||||||| |||||||||||| ||| |||||||||    
12785266 gggaacatgttgtgctgaccaaaaatcgagaacatgctcctcacgtcgtc 12785315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 24629922 - 24630015
Alignment:
35 ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    ||||||||||||  || | |||| ||||||||||||||||||||||| |||||||||||| ||||  ||| ||| |||| || |||||||||||    
24629922 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcagcaacatagcttccgtctcaatcctcgggaacat 24630015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 26140340 - 26140282
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc 117  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| | ||| ||| ||||||    
26140340 gaatcaaactcttaagaatatcttcaggcgatctcaacaacgtaacatacatatcgatc 26140282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 37396928 - 37396801
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacat 127  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| | ||||||||    
37396928 ataatactacctaaacatctttatctagccgaatcaaactcttgagaatatcttcaggtgatctcagcaacgtagcatccatctcgatcgttgggaacat 37396829  T
128 tctgtgctgaccaaatatcgagaacatg 155  Q
      ||||||||||||||||||||||||||    
37396828 gttgtgctgaccaaatatcgagaacatg 37396801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 7576087 - 7576224
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacat 127  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||| ||||| |  ||||||| || |||||||||| ||| ||||||    
7576087 ataatactacctaaacatcttcatatggccgaattaaactcttgagaatatctttaggtgatctaagtaacgaagtatacatctcgatcgtcgagaacat 7576186  T
128 tctgtgctgaccaaatatcgagaacatgttccacacgt 165  Q
      | |||| ||||||||||||||||||| ||| |||||    
7576187 gttatgctaaccaaatatcgagaacatgctcctcacgt 7576224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 16418101 - 16418200
Alignment:
38 cctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtgctg 136  Q
    |||||||||  || |||||| || |||||||||||||||||||| |||| ||||||| ||| | | |||||||||| || |||||||||||  |||||||    
16418101 cctaaacataatcttctggcagagtcaaactcttgagaatatcttcaggtgatctcagcaatgtaacatccatctcaatcctcgggaacatgttgtgctg 16418200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 10976000 - 10975898
Alignment:
54 tggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtgctgaccaaatatcgagaac 152  Q
    |||| ||||||||||||||||||||| | ||| |||||||| ||||  ||| |||||||| || ||||||||||| | |||||||| | |||  ||||||    
10976000 tggcagaatcaaactcttgagaatatattcagacgatctcagcaacatagcttccatctcaatcctcgggaacatgcggtgctgacgatatacagagaac 10975901  T
153 atg 155  Q
    |||    
10975900 atg 10975898  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 15798097 - 15798143
Alignment:
54 tggccgaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||| |||||||||| |||||||||||| ||||| ||||||||||||    
15798097 tggcggaatcaaactgttgagaatatcttcaggcaatctcatcaacg 15798143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 26604613 - 26604651
Alignment:
43 acatcttcatctggccgaatcaaactcttgagaatatct 81  Q
    |||||||||||||| |||||||||||||||| |||||||    
26604613 acatcttcatctggacgaatcaaactcttgaaaatatct 26604651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 26793551 - 26793405
Alignment:
13 aaaataatgatacaacataata---ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatcca 109  Q
    |||||||||| |||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||| | || |||||    
26793551 aaaataatgacacaacataataatactacataaacatcttcatttggccgaatcaaactcttgagaatatcttctggcgatctcagcaatgtagaatcca 26793452  T
110 tctcgat-ctcgggaacattctgtgctgaccaaatatcgagaacatg 155  Q
    ||||||| |||||||||||  |||| |||||||||||||||| ||||    
26793451 tctcgatcctcgggaacatgttgtgttgaccaaatatcgagagcatg 26793405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 27799882 - 27799755
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    ||||||||||| |||| |||||||||  ||||||||||||||||||||||||| |||| |||  || ||||| ||||||||||||||| | ||| |||||    
27799882 ataatactacccaaacttcttcatctaaccgaatcaaactcttgagaatatcttcaggagattccagcaacgtagcatccatctcgatccacggaaacat 27799783  T
128 tctgtgctgaccaaatatcgagaacatg 155  Q
      ||||||| |||||||| |||||||||    
27799782 gttgtgctggccaaatattgagaacatg 27799755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 39899880 - 39899924
Alignment:
37 acctaaacatcttcatctggccgaatcaaactcttgagaatatct 81  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
39899880 acctaaacatcttcatctagccgaatcaaacttttgagaatatct 39899924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 15471712 - 15471672
Alignment:
60 aatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||||||||||||||||||||| |||||||||||| |||||    
15471712 aatcaaactcttgagaatatcttcaggcgatctcagcaacg 15471672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 48706929 - 48706987
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc 117  Q
    ||||||||||||||||||||||| ||| |||||||| ||||| | ||| ||| ||||||    
48706929 gaatcaaactcttgagaatatcttcagacgatctcagcaacgtaacatacatatcgatc 48706987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 21760408 - 21760449
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
21760408 gaatcaaactgttgagaatatcttcagacgatctcatcaacg 21760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 11789163 - 11789211
Alignment:
52 tctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||||| |||||||||| || ||||||||| |||||||||||| |||||    
11789163 tctggcagaatcaaactgtttagaatatcttcaggcgatctcaacaacg 11789211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 29788228 - 29788369
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacat 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || | ||||||| |||||||| ||||||||||||| ||   |||||    
29788228 ataatactacctaaacatcttcatctgaccgaatcaaactcttgagaatttcttcaagtgatctcagcaacgaagtatccatctcgatcgtcacaaacat 29788327  T
128 tctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
      ||||||||||||||||| |||||||| ||| || ||||||    
29788328 gttgtgctgaccaaatatcaagaacatgctcctcatgtcgtc 29788369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 29634898 - 29635025
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcga-tctcgggaacat 127  Q
    ||||||||||||| ||| ||||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||| ||||||| | |||||||||     
29634898 ataatactacctacacaccttcatctgaccgattcaaactcttgagaatatcttcaggcgatctcagcaacggagcatctatctcgattgtcgggaacaa 29634997  T
128 tctgtgctgaccaaatatcgagaacatg 155  Q
      |||||| | |||||||| ||||||||    
29634998 gttgtgctaatcaaatatcaagaacatg 29635025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 20409755 - 20409896
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    |||||||||||||||| |  |||||||||  |||||||||||||| |||||||  ||||||||||| ||| | |||||| ||||| || |||||||||||    
20409755 ataatactacctaaacttaatcatctggcataatcaaactcttgaaaatatcttaaggcgatctcaacaatgtagcatcgatctcaatcctcgggaacat 20409854  T
128 tctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
      |||| ||||||||||||||||||||| ||| ||| |||||    
20409855 gttgtgttgaccaaatatcgagaacatgctcctcacatcgtc 20409896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 4812355 - 4812233
Alignment:
49 tcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacattctgtgctgaccaaatatcg 147  Q
    |||||||||||||||||| || ||||||||||| |||  ||||||| |||| || |||||| || |||| ||| ||||||  |||||||||||||||||     
4812355 tcatctggccgaatcaaagtcatgagaatatcttcagaagatctcaccaacaaaacatccaacttgatcgtcgagaacatgttgtgctgaccaaatatc- 4812257  T
148 agaacatgttccacacgtcgtcatt 172  Q
     ||||||| ||| ||||||||||||    
4812256 -gaacatgctcctcacgtcgtcatt 4812233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 17370994 - 17370908
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatc-tcgggaacattctgtgctgaccaaata 144  Q
    ||||||||||||||||||||||| ||||||| |||| |||||  ||| ||||||| ||| |||||||||| | |||||||| |||||    
17370994 gaatcaaactcttgagaatatcttcaggcgacctcaacaacgttgcaaccatctcaatcatcgggaacatgcggtgctgacgaaata 17370908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 17267307 - 17267425
Alignment:
52 tctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtgctgaccaaatatcgaga 150  Q
    |||||| |||||||||||||||||||||||  |||| |||||| ||||| | | | ||| ||||| | |||||||||  ||||||| | ||| |||||||    
17267307 tctggcagaatcaaactcttgagaatatctttaggcaatctcagcaacgtaacttacatatcgatccacgggaacatgatgtgctgccaaaaaatcgaga 17267406  T
151 acatgttccacacgtcgtc 169  Q
    ||||| ||| ||| |||||    
17267407 acatgctcctcacatcgtc 17267425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 3162575 - 3162639
Alignment:
16 ataatgatacaacataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatct 81  Q
    ||||| ||||||  |||||| |||||| ||||||||||||  |||||||||||||| |||||||||    
3162575 ataataatacaatttaatacaacctaa-catcttcatctgagcgaatcaaactcttcagaatatct 3162639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 55390799 - 55390895
Alignment:
60 aatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtgctgaccaaatatcgagaacatg 155  Q
    ||||||||| |||||||||||| |||| ||| ||| ||| | |||||||||||| || |||| |||||| | ||| |||| |||||  |||||||||    
55390799 aatcaaacttttgagaatatcttcaggtgatatcaacaatgtagcatccatctcaatcctcgcgaacatacggtgttgacgaaatactgagaacatg 55390895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 5306437 - 5306583
Alignment:
13 aaaataatgatacaacataa---tactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatcca 109  Q
    |||||||||| |||||||||   |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| | ||||| ||| | ||||||||    
5306437 aaaataatgacacaacataataatactacctaaacatcttcgtctggccgagtcaaactcttgagaatatcttcaggaggtctcaacaatgtagcatcca 5306536  T
110 tctcgatc-tcgggaacattctgtgctgaccaaatatcgagaacatg 155  Q
    |||||||| ||||||| ||  | | ||||||||||||||||||||||    
5306537 tctcgatcgtcgggaagatgatatcctgaccaaatatcgagaacatg 5306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 28746973 - 28747034
Alignment:
52 tctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctc 113  Q
    |||||| |||||||||| |||||||||| | |||||||||||| ||||| ||| ||||||||    
28746973 tctggcagaatcaaactgttgagaatattttcaggcgatctcagcaacgtagcttccatctc 28747034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 37059093 - 37059057
Alignment:
45 atcttcatctggccgaatcaaactcttgagaatatct 81  Q
    ||||| |||||||||||||||||||||||||||||||    
37059093 atctttatctggccgaatcaaactcttgagaatatct 37059057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 18332770 - 18332692
Alignment:
35 ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctc 113  Q
    |||| |||||||  |||| ||||  |||||||||||| | ||||||| |||||||||||| ||||| ||| ||||||||    
18332770 ctacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcaacaacgtagcttccatctc 18332692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 26617493 - 26617534
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    ||||||||||||| ||||||||| |||||||||||| |||||    
26617493 gaatcaaactcttaagaatatcttcaggcgatctcagcaacg 26617534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 44100707 - 44100566
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    |||||| ||||||||||||||| |||| |||||||||| |||||||||||||| |||| ||||||| ||| | ||||||||||||||| ||||| |||||    
44100707 ataataatacctaaacatcttcctctgaccgaatcaaattcttgagaatatcttcaggtgatctcagcaatgtagcatccatctcgatcctcggaaacat 44100608  T
128 tctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
      |||||||||||||| |||| |||||| ||| ||| |||||    
44100607 gttgtgctgaccaaatgtcgataacatgctcctcacatcgtc 44100566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 12227470 - 12227611
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    |||||| |||||||||||  |||||| ||  |||||||||| ||| |||||   || || |||||| ||||  ||||||||||||||| |||| ||||||    
12227470 ataatattacctaaacataatcatctagcataatcaaactcatgaaaatatactcaagcaatctcagcaacatagcatccatctcgatcctcgagaacat 12227569  T
128 tctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
      |||||  ||||||||||||||||||| ||| |||||||||    
12227570 gttgtgcaaaccaaatatcgagaacatgctcctcacgtcgtc 12227611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 31931778 - 31931690
Alignment:
40 taaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    |||||||  |||| |||| |||||||| |||| ||||||||| |||||||||||| ||||| | | |||||||| || |||||||||||    
31931778 taaacataatcatgtggcagaatcaaattcttcagaatatcttcaggcgatctcagcaacgtaacttccatctcaatcctcgggaacat 31931690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 23607938 - 23608080
Alignment:
29 ataatactacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcga-tctcgggaacat 127  Q
    ||||||||| |||||| ||||||||||||  |||||||||||||||||||||| |||| ||||||  ||||||||||||||||| || | || |||||||    
23607938 ataatactatctaaacttcttcatctggctaaatcaaactcttgagaatatcttcaggtgatctctgcaacgaagcatccatctagattgtcaggaacat 23608037  T
128 -tctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
     | |||  ||||||||| ||||||||||||||| |||||||||    
23608038 gtttgttttgaccaaatgtcgagaacatgttcctcacgtcgtc 23608080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 14095850 - 14095729
Alignment:
35 ctacctaaacatcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacattctgtg 133  Q
    ||||||||||||  || | ||||  ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||   |||    
14095850 ctacctaaacataatcttgtggcataatcaaactcttgagaatatctacaggcgatctcagcaacgaagcttccatctcaatcctcgggaacatgtggtg 14095751  T
134 ctgaccaaatatcgagaacatg 155  Q
    ||||| | |||| |||||||||    
14095750 ctgacgatatatggagaacatg 14095729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 22962421 - 22962483
Alignment:
16 ataatgatacaacataatactacctaaacatcttcatctggccgaatcaaactcttgagaata 78  Q
    ||||| ||||||  |||||| |||||||||||||||||| ||||||||||| |||||||||||    
22962421 ataataatacaatttaatacaacctaaacatcttcatctagccgaatcaaaatcttgagaata 22962483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 23825972 - 23825910
Alignment:
16 ataatgatacaacataatactacctaaacatcttcatctggccgaatcaaactcttgagaata 78  Q
    ||||| ||||||  |||||| |||||||||||||||||| ||||||||||| |||||||||||    
23825972 ataataatacaatttaatacaacctaaacatcttcatctagccgaatcaaaatcttgagaata 23825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 5973050 - 5973119
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    ||||||||||||||||||||||| |||||||||||| ||| | ||| |||||||| || |||||||||||    
5973050 gaatcaaactcttgagaatatcttcaggcgatctcagcaatgtagcttccatctcaatcctcgggaacat 5973119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 8711072 - 8711003
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgat-ctcgggaacat 127  Q
    |||||||||||||||||||||||  |||| |||||| ||| | ||| |||||||| || |||||||||||    
8711072 gaatcaaactcttgagaatatctttaggcaatctcagcaatgtagcttccatctcaatcctcgggaacat 8711003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 3097533 - 3097573
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaac 99  Q
    |||||||||| |||||||||||| |||||||||||| ||||    
3097533 gaatcaaactgttgagaatatcttcaggcgatctcagcaac 3097573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 1263 - 1102
Alignment:
13 aaaataatgatacaacataatactac---ctaaacatcttcatctggcc-gaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatcc 108  Q
    |||||||||| ||||||||||| |||   |||||||||||||||| ||| ||||||||||||||||||||||| |||  ||||||| | || || |||||    
1263 aaaataatgacacaacataataatactttctaaacatcttcatctagcccgaatcaaactcttgagaatatcttcagaagatctcagctacaaaacatcc 1164  T
109 atctcgatc-tcgggaacattctgtgctgaccaaatatcgagaacatgttccacacgtcgtc 169  Q
    | ||||||| ||| ||||||  ||||| ||||||||||| |||||||| ||| |||||||||    
1163 aactcgatcgtcgagaacatgatgtgccgaccaaatatcaagaacatgatcctcacgtcgtc 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 2821 - 2694
Alignment:
45 atcttcatctggccgaatcaaactcttgagaatatctacaggcgatctcatcaacgaagcatccatctcgatctcgg-gaacattctgtgctgaccaaat 143  Q
    ||||||||||||   |||||||| ||||||| ||||| |||  ||||||| ||| ||| |||| | ||||||| | | ||||| | |||||| |||||||    
2821 atcttcatctggttaaatcaaacccttgagattatcttcagaagatctcagcaatgaaacatcaaactcgatcgccgagaacactttgtgctaaccaaat 2722  T
144 atcgagaacatgttccacacgtcgtcat 171  Q
    |||| || |||||||| |||||| ||||    
2721 atcgtgagcatgttcctcacgtcatcat 2694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 36852 - 36811
Alignment:
59 gaatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
36852 gaattaaactcttgagaatatcttcaggcgatctcaacaacg 36811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 5536 - 5496
Alignment:
60 aatcaaactcttgagaatatctacaggcgatctcatcaacg 100  Q
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5536 aatcaaactgttgagaatatcttcaggcgatctcaacaacg 5496  T

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