View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15197_high_3 (Length: 438)
Name: NF15197_high_3
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15197_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 3361631 - 3361215
Alignment:
| Q |
1 |
gactaattcgaggagataaatcccaccgtgtatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtg |
100 |
Q |
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|||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361631 |
gactaattcgaggagacaaattcaaccgtctatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtg |
3361532 |
T |
|
| Q |
101 |
gaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatgatttggcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361531 |
gaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatgatttggcct |
3361432 |
T |
|
| Q |
201 |
gtactgagcatgaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagagtgatcatac |
300 |
Q |
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| T |
3361431 |
gtattgagcatgaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcggtcaccactttaaagagtgatcatac |
3361332 |
T |
|
| Q |
301 |
cgattatgtagcgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcatcggcaagattctcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3361331 |
cgattatgtagcgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcatcggcaagattcacat |
3361232 |
T |
|
| Q |
401 |
ggcaaggtttggcttta |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
3361231 |
ggcaaggtttggcttta |
3361215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 369
Target Start/End: Complemental strand, 35907688 - 35907360
Alignment:
| Q |
41 |
atttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtggaatcatgtgttcaagttttgagaattttgaacaccaagg |
140 |
Q |
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|||||||| |||||| ||||||||||||||||||| || || ||| ||||| | ||| | | | |||||||| ||||||||| | ||| |||||| | |
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| T |
35907688 |
atttactggagctttttgttgagttttgcagatgatatggaggaagatgccaaggatgagaagtgctgtgttcaggttttgagatgtatgatcaccaatg |
35907589 |
T |
|
| Q |
141 |
cagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatgatttggcctgtactgagcatgaaaactggcctgaaatttgttgtagtgc |
240 |
Q |
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||||| ||| |||||| || | |||| ||||| || |||| ||||||| |||||||| ||||| ||||||||||||||||||| || || | || |
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| T |
35907588 |
cagataatgagattgagcaattggaaatgaatctcgcgtcccttcagaatgaattggcctggactgaaaatgaaaactggcctgaaatatgctgcaatgg |
35907489 |
T |
|
| Q |
241 |
tttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagagtgatcataccgattatgtagcgatgcaggtcctattgcatagtaaacct |
340 |
Q |
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|||||| ||| |||| |||| ||||| | ||| || | |||||| ||||||| |||| | ||| ||| || | ||||| | |||||| ||||| ||| |
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| T |
35907488 |
tttgacagaaaaaatcaaccagcttgatgttgcggttaacactttgaagagtggtcatgctgatgatgcagaggtgcagctactattggatagtggacca |
35907389 |
T |
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| Q |
341 |
gctgagacacttcatgaaataatgaaggc |
369 |
Q |
| |
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||||||| ||||||||||||| ||||||| |
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|
| T |
35907388 |
gctgagagacttcatgaaatagtgaaggc |
35907360 |
T |
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