View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15197_low_1 (Length: 676)

Name: NF15197_low_1
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15197_low_1
NF15197_low_1
[»] chr2 (5 HSPs)
chr2 (13-468)||(34169011-34169465)
chr2 (541-646)||(34168833-34168938)
chr2 (236-382)||(34171991-34172140)
chr2 (113-252)||(34168651-34168785)
chr2 (111-143)||(34169794-34169826)
[»] chr8 (2 HSPs)
chr8 (204-299)||(11081980-11082078)
chr8 (204-307)||(11071780-11071883)
[»] chr6 (1 HSPs)
chr6 (289-374)||(21862439-21862524)
[»] scaffold0048 (1 HSPs)
scaffold0048 (247-382)||(61939-62077)
[»] chr1 (2 HSPs)
chr1 (243-407)||(2071633-2071803)
chr1 (243-407)||(2075163-2075333)
[»] chr4 (1 HSPs)
chr4 (243-403)||(54148119-54148283)
[»] chr3 (1 HSPs)
chr3 (216-332)||(814463-814582)


Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 34169465 - 34169011
Alignment:
Q  13 aatataaactcaaaatactacctatcaagcaaaagtttactaactcttacgctttgttacaaaattagccctaaaaataaactaaacctaacaaaggaaa 112  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34169465 aatataaactcaaaatattacctatcaagctaaagtttactaacccttacgctt-gttacaaaattagccctaaaaataaactaaacctaacaaaggaaa 34169367  T
Q  113 tttcatatgattacaatgacataatataatataataaaagctacaattaaatatatagtaaatcctaatgaattgtagactaataacttaaaaacctaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34169366 tttcatatgattacaatgacataatataatataataaaagctacaattaaatatatagtaaatcctaatgaattgtagactagtaacttaaaaacctaaa 34169267  T
Q  213 ggacccaatatcataggtccaataacttagtatctaacacatcccctcaaactcacgatgcaccaagaaacatcaagagtttttcaagcaaaaaacgaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34169266 ggacccaatatcataggtccaataacttagtatctaacacatcccctcaaactcacgatgcaccaagaaacatcaagagtttttcaagcaaaaaacgaaa 34169167  T
Q  313 agcatactcaataatataaacttaaaatactttccgtcaagctaaagcataccaaactttaattttgttaaatttaaccctaaaaataaactaaaccaac 412  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34169166 agcataatcaataatataaacttaaaatactttccctcaagctaaagcatactaaactttaattttgttaaatttaaccctaaaaataaactaaaccaac 34169067  T
Q  413 taataacatagacaacaaagaggagcaaccaaagaataaacaccggccgaagcgat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34169066 taataacatagacaacaaagaggagcaaccaaagaataaacaccggccgaagcgat 34169011  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 541 - 646
Target Start/End: Complemental strand, 34168938 - 34168833
Alignment:
Q  541 ttgtcttcaacaagaactatttacgaaccaattgtaagcactatctttactcactaaacaaacaatttgttagcatcgtcttcactcgccaaacaaacaa 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34168938 ttgtcttcaacaagaactatttacgaaccaattgtaagcactatctttactcactaaacaaacaatttgttagcatcgtcctcactcgccaaacaaacaa 34168839  T
Q  641 aagaaa 646  Q
    ||||||    
T  34168838 aagaaa 34168833  T

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Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 236 - 382
Target Start/End: Complemental strand, 34172140 - 34171991
Alignment:
Q  236 aacttagtatctaacacatcccctcaaactcacgatgcac---caagaaacatcaagagtttttcaagcaaaaaacgaaaagcatactcaataatataaa 332  Q
    |||||||||||||||||||||||||||||||| ||||||    ||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  34172140 aacttagtatctaacacatcccctcaaactcatgatgcaaaaacaagaaatatcaagagtttttcaaacaaaaaaagaaaaacatactcaataatataaa 34172041  T
Q  333 cttaaaatactttccgtcaagctaaagcataccaaactttaattttgtta 382  Q
    |||||||||||| |  ||||||||||||||||||||||| ||||||||||    
T  34172040 cttaaaatacttcctctcaagctaaagcataccaaacttaaattttgtta 34171991  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 34168785 - 34168651
Alignment:
Q  113 tttcatatgattacaatgacataatataatataataaaagctacaattaaatatatagtaaatcctaatgaattgtagactaataacttaaaaacctaaa 212  Q
    ||||| |||||||||||||||||||||||||     || | |||||  |||||||||||||| |||||| || | ||||| | ||||||| |||| || |    
T  34168785 tttcacatgattacaatgacataatataata-----aaggttacaagcaaatatatagtaaaacctaataaactatagacaagtaacttagaaacttata 34168691  T
Q  213 ggacccaatatcataggtccaataacttagtatctaacac 252  Q
     |  |||||| |||| | ||||||||||| ||||||||||    
T  34168690 aggtccaataacatatgaccaataacttaatatctaacac 34168651  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 34169826 - 34169794
Alignment:
Q  111 aatttcatatgattacaatgacataatataata 143  Q
    |||||||||||| ||||||||||||||||||||    
T  34169826 aatttcatatgactacaatgacataatataata 34169794  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 11081980 - 11082078
Alignment:
Q  204 aaacctaaaggacccaatatcataggtccaataacttagtatctaacacatcccctcaaactcacgatgcaccaa---gaaacatcaagagtttttcaa 299  Q
    |||| |||||| ||||||| ||| || ||||||||||| |||||||||| |||||||||||||| |||||| |||   |||||||| ||||||| ||||    
T  11081980 aaacttaaagggcccaatagcattggcccaataacttactatctaacacttcccctcaaactcatgatgcaacaacatgaaacatcgagagtttgtcaa 11082078  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 11071780 - 11071883
Alignment:
Q  204 aaacctaaaggacccaatatcataggtccaataacttagtatctaacacatcccctcaaactcacgatgcaccaagaaacatcaagagtttttcaagcaa 303  Q
    ||||||||| | ||||||| |||||| ||||||||||| |||| ||||| ||| ||||||||||||| ||| || || ||||  || |||| |||| |||    
T  11071780 aaacctaaatggcccaatagcataggcccaataacttactatccaacacttccactcaaactcacgacgcaacatgacacatagagtgtttgtcaaacaa 11071879  T
Q  304 aaaa 307  Q
    ||||    
T  11071880 aaaa 11071883  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 21862524 - 21862439
Alignment:
Q  289 gagtttttcaagcaaaaaacgaaaagcatactcaataatataaacttaaaatactttccgtcaagctaaagcataccaaactttaa 374  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||| ||  || |||| || ||||||| |||||||| |||||||||    
T  21862524 gagtttgtcaagcaaaatacgaaaaacatactaaataatataaagttctaacacttcccctcaagctgaagcatactaaactttaa 21862439  T

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Target: scaffold0048 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 382
Target Start/End: Original strand, 61939 - 62077
Alignment:
Q  247 taacacatcccctcaaactcacgatgcaccaa---gaaacatcaagagtttttcaagcaaaaaacgaaaagcatactcaataatataaacttaaaatact 343  Q
    ||||||||  ||||||||||| ||| || |||   ||||| ||| |||||| |||| |||||||| ||||  ||||||||||||||||||| | ||  ||    
T  61939 taacacatttcctcaaactcatgatccaacaacaggaaacctcatgagtttgtcaaacaaaaaacaaaaaaaatactcaataatataaactcagaaccct 62038  T
Q  344 ttccgtcaagctaaagcataccaaactttaattttgtta 382  Q
      ||||||||||||||| ||||||  ||||| |||||||    
T  62039 acccgtcaagctaaagcttaccaagttttaagtttgtta 62077  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 407
Target Start/End: Original strand, 2071633 - 2071803
Alignment:
Q  243 tatctaacacatcccctcaaactcacgatgcac---caagaaacatcaagagtttttcaagcaaaaaacgaaaagcatactcaataatataaacttaaaa 339  Q
    |||||||||| | |||||||||||| ||||||    |||||| |||   |||||| |||| ||||| ||||||| |||||| ||||||||||||||  ||    
T  2071633 tatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatacgaaaaacatactaaataatataaacttgtaa 2071732  T
Q  340 tactttccgtcaagctaaagcataccaaac-tttaattttgtt--aaatttaaccctaaaaataaactaaa 407  Q
     |||  || |||||||||||| ||| || | |||||  |||||  ||||| |||| |||||||||||||||    
T  2071733 cactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataaaaataaactaaa 2071803  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 407
Target Start/End: Original strand, 2075163 - 2075333
Alignment:
Q  243 tatctaacacatcccctcaaactcacgatgcac---caagaaacatcaagagtttttcaagcaaaaaacgaaaagcatactcaataatataaacttaaaa 339  Q
    |||||||||| | |||||||||||| ||||||    |||||| |||   |||||| |||| ||||| ||||||| |||||| ||||||||||||||  ||    
T  2075163 tatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatacgaaaaacatactaaataatataaacttgtaa 2075262  T
Q  340 tactttccgtcaagctaaagcataccaaac-tttaattttgtt--aaatttaaccctaaaaataaactaaa 407  Q
     |||  || |||||||||||| ||| || | |||||  |||||  ||||| |||| |||||||||||||||    
T  2075263 cactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataaaaataaactaaa 2075333  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 403
Target Start/End: Complemental strand, 54148283 - 54148119
Alignment:
Q  243 tatctaacacatcccctcaaactcacgatgcaccaa---gaaacatcaagagtttttcaagcaaaaaacgaaaagcatactcaataatataaacttaaaa 339  Q
    |||||||||||| | |||||||||| |||||| |||   ||| |||   |||||| |||| ||||| ||||||| |||| | ||||||||||||||  ||    
T  54148283 tatctaacacatactctcaaactcatgatgcatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatagtaaataatataaacttttaa 54148184  T
Q  340 tactttccgtcaagctaaagcataccaaactttaattttgtta-aatttaaccctaaaaataaac 403  Q
     |||  || ||||||| |||| ||| || ||||||  |||||| || ||||||| ||||||||||    
T  54148183 cactacccctcaagctgaagcttactaagctttaagcttgttacaaattaaccccaaaaataaac 54148119  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 814463 - 814582
Alignment:
Q  216 cccaatatcataggtccaataacttagtatctaacacatcccctcaaactcacgatg---caccaagaaacatcaagagtttttcaagcaaaaaacgaaa 312  Q
    ||||||| | || ||||||||  ||| |||||||||  | ||||||||||||| |||   || ||||||||||   |||||| |||| ||||| ||||||    
T  814463 cccaataacttaagtccaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaaacattgtgagtttgtcaaacaaaatacgaaa 814562  T
Q  313 agcatactcaataatataaa 332  Q
    | |||||| |||||||||||    
T  814563 aacatactaaataatataaa 814582  T

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