View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15197_low_15 (Length: 239)
Name: NF15197_low_15
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15197_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11269497 - 11269268
Alignment:
| Q |
1 |
atagttactttcaagtgaaattggattttaaatgctgtattgtcgaaaacaatgaagtttattgttttgaattctgatcaaaacagttaataaatatgta |
100 |
Q |
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| T |
11269497 |
atagttactttcaagtgaaattggattttaaacgctatattgtcgaaaacaatgaagtttattgttttgaattctgatcaaaacagttaataaatatgta |
11269398 |
T |
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| Q |
101 |
agatagatctgtcatgctattgataacagcagaaacccacagatcatgtagcaaaactccaaaaagtccatgatttaggcagtttaacagtaaaggttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11269397 |
agatagatctgtcatgctattgataacagcagaaacccacagatcatgtagcaaaactccaaaaagtccatgatttaggcagtttaactgtaaaggttaa |
11269298 |
T |
|
| Q |
201 |
cattgtggcttctgcaatttatctgatgat |
230 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
11269297 |
cattgtggcttctgcaatgtatctgatgat |
11269268 |
T |
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