View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15197_low_18 (Length: 206)
Name: NF15197_low_18
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15197_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 42886413 - 42886244
Alignment:
| Q |
21 |
acgatgtcggagatggcgaacacaaatccagagggaaattgaagcggcgttgaatcattgaggaaaattgaagcggtatggtaaccgattcgtttgtgaa |
120 |
Q |
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| T |
42886413 |
acgatgtcggagatggcaaacacaaatccagagggaaattgaagcggcgttgaatcgttgaggaaaattgaagcgatatggtaaccgattcgtttgtgaa |
42886314 |
T |
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| Q |
121 |
ggaatagagaagaggacattaacgtggaaggaagcccatgacatgtcgattccatggatggaggagatgt |
190 |
Q |
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| T |
42886313 |
ggaataaagaagaggacattaacgtggaaggaagcccatgacatgtcgattccatggatggaggagatgt |
42886244 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 43962880 - 43962754
Alignment:
| Q |
69 |
gttgaatcattgaggaaaattgaagcggtatggtaaccgattcgtttgtgaaggaatagagaagaggacatta--------acgtggaaggaagcccatg |
160 |
Q |
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| T |
43962880 |
gttgaatcgttgaaggaaactgaagcggcgtggtaaccaattcgtttgtgaaggaagagagaagaggacattacctcaacgacgtggaaagaagcccatg |
43962781 |
T |
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| Q |
161 |
acatgtcgattccatggatggaggaga |
187 |
Q |
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| T |
43962780 |
acatgtcgattccatggatggaggaga |
43962754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 38270055 - 38270019
Alignment:
| Q |
21 |
acgatgtcggagatggcgaacacaaatccagagggaa |
57 |
Q |
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| T |
38270055 |
acgatgtcggagatggcgaacacagatcccgagggaa |
38270019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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