View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15197_low_5 (Length: 347)
Name: NF15197_low_5
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15197_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 31069054 - 31068767
Alignment:
| Q |
10 |
ataatactgtttaatttagtttatgccattcctatttgagcagggagtatcttcctattggtgggagcatccatatgattgaagaatcactgaagctggc |
109 |
Q |
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| T |
31069054 |
ataatactgtttaatttagtttatgccattcctatttgagcagggagtatcttcctattggtgggagcatccatatgattgaagaatcactgaagctggc |
31068955 |
T |
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| Q |
110 |
atatggagatgattctgagttcatcaaggataaacgaatagctgcagttcaggctttatctgggactggtgcatgtcgactttttgccgcatttcaacag |
209 |
Q |
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| T |
31068954 |
atatggagatgattctgagttcatcaaggataaacgaatagctgcagttcaggctttatctgggactggtgcatgtcgactttttgccgcatttcaacag |
31068855 |
T |
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| Q |
210 |
cgttttcatcccaaaacccaaatctatatgccagttctcacctgggccaagtgagtattttttgagtcttccaagtttgatataaatt |
297 |
Q |
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| T |
31068854 |
cgttttcatcccaaaacccaaatctatatgccagttctcacctgggccaagtgactattttttgagtcttccaagtttgatataaatt |
31068767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 31075858 - 31075634
Alignment:
| Q |
44 |
tttgagcagggagtatcttcctattggtgggagcatccatatgattgaagaatcactgaagctggcatatggagatgattctgagttcatcaaggataaa |
143 |
Q |
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| T |
31075858 |
tttgagcagggagtatcttcctatgggtggaagcatacatatggttcaagaatcactgaagctggcgtatggagacgattccgagttcatcaaggataaa |
31075759 |
T |
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| Q |
144 |
cgaatagctgcagttcaggctttatctgggactggtgcatgtcgactttttgccgcatttcaacagcgttttcatcccaaaacccaaatctatatgccag |
243 |
Q |
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| T |
31075758 |
agaatagctgcagttcaggctttatctgggactggtgcatgtcgacttttcgccgtatttcaacagcgatttcatcccaacacccaaatctatataccag |
31075659 |
T |
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| Q |
244 |
ttctcacctgggccaagtgagtatt |
268 |
Q |
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| T |
31075658 |
ttcccacctggtccaagtcagtatt |
31075634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 31067945 - 31067903
Alignment:
| Q |
289 |
atataaatttagatatttgttcgatatcttacctataattatt |
331 |
Q |
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| T |
31067945 |
atataaatttagatatttgttcgatatcttacctataattatt |
31067903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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