View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15197_low_6 (Length: 345)
Name: NF15197_low_6
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15197_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 30503520 - 30503838
Alignment:
| Q |
16 |
atacatacatacaatacaacaatttaatgacaaccagaaatctttcacaaaatttaactgacaaataaataaaacctaaacctactagctactactagta |
115 |
Q |
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| T |
30503520 |
atacatacatacaatacaacaaattaatgacaaccagaaatctttcacaaaatttaactgacaaataaataaaacctaaacctactagctactactagta |
30503619 |
T |
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| Q |
116 |
cttaaaattaattagacaattaataatattcatgacttgagataaataaagatagttttttccatggaatatgagaatagccattttattgagttgcacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503620 |
cttaaaattaattagacaattaataatattcatgacttgagataaataaagatagttttttccatggaatatgagaatagccattttattgagttgcacc |
30503719 |
T |
|
| Q |
216 |
tggaggtggaagctgatgttgatggtgatgatgaagatgaagaggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503720 |
tggaggtggaagctgatgttgatggtgatgatgaagatgaagaggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgt |
30503819 |
T |
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| Q |
316 |
tgtggtggacgtttccttt |
334 |
Q |
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||||||||||||||||||| |
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| T |
30503820 |
tgtggtggacgtttccttt |
30503838 |
T |
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