View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15197_low_7 (Length: 305)

Name: NF15197_low_7
Description: NF15197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15197_low_7
NF15197_low_7
[»] chr5 (5 HSPs)
chr5 (119-210)||(29684342-29684433)
chr5 (204-254)||(29684449-29684499)
chr5 (7-50)||(29684232-29684274)
chr5 (124-165)||(2178820-2178861)
chr5 (124-165)||(12363648-12363689)
[»] chr3 (4 HSPs)
chr3 (124-165)||(42497055-42497096)
chr3 (124-165)||(29718251-29718292)
chr3 (124-165)||(39876675-39876716)
chr3 (124-165)||(51709072-51709113)
[»] chr8 (2 HSPs)
chr8 (124-155)||(1363837-1363868)
chr8 (124-172)||(39746984-39747032)
[»] chr1 (7 HSPs)
chr1 (124-155)||(46088030-46088061)
chr1 (124-165)||(7710984-7711025)
chr1 (124-165)||(22098982-22099023)
chr1 (124-165)||(29704114-29704155)
chr1 (124-165)||(37672380-37672421)
chr1 (124-165)||(39583160-39583201)
chr1 (124-165)||(50540836-50540877)
[»] scaffold0418 (1 HSPs)
scaffold0418 (124-158)||(4559-4593)
[»] chr4 (5 HSPs)
chr4 (124-158)||(40497442-40497476)
chr4 (124-165)||(18582901-18582942)
chr4 (124-165)||(39087604-39087645)
chr4 (124-165)||(55358384-55358425)
chr4 (129-169)||(33574388-33574428)
[»] scaffold0197 (1 HSPs)
scaffold0197 (124-165)||(30222-30263)
[»] chr7 (2 HSPs)
chr7 (124-165)||(40258918-40258959)
chr7 (124-172)||(17844598-17844646)
[»] chr6 (3 HSPs)
chr6 (124-165)||(3636686-3636727)
chr6 (124-172)||(5301647-5301695)
chr6 (142-198)||(20717415-20717471)
[»] chr2 (4 HSPs)
chr2 (124-165)||(8070662-8070703)
chr2 (124-165)||(10727888-10727929)
chr2 (124-165)||(42132725-42132766)
chr2 (124-165)||(43135675-43135716)
[»] scaffold0076 (1 HSPs)
scaffold0076 (124-156)||(10832-10864)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 29684342 - 29684433
Alignment:
Q  119 tattaagcttataaactcgtgaaataagttataagcttatgatgaaataacatttatcaaataaggtttttcttgtcatagaacttataaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29684342 tattaagcttataaactcgtgaaataagttataagcttatgatgaaataacatttatcaaataaggtttttcttgtcatagaacttataaac 29684433  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 29684449 - 29684499
Alignment:
Q  204 tataaaccttaagcttgtttcttggtcttacccatcaacataccatataca 254  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29684449 tataaaccttaagctcgtttcttggtcttacccatcaacataccatataca 29684499  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 29684232 - 29684274
Alignment:
Q  7 tggttgacccaaaaataaaaatagagagatggagaaatggaaaa 50  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  29684232 tggttgacccaaaaa-aaaaatagagagatggagaaatgaaaaa 29684274  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 2178861 - 2178820
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  2178861 agcttataaactcgtgaaataagctataagctcatggtgaaa 2178820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 12363648 - 12363689
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  12363648 agcttataagctcgtgaaataagttataagctcatggtgaaa 12363689  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 42497096 - 42497055
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  42497096 agcttataagctcgtgaaataagttataagctcatgatgaaa 42497055  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 29718251 - 29718292
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  29718251 agcttataagctcgtgaaataagctataagctcatgatgaaa 29718292  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 39876716 - 39876675
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  39876716 agcttataagctcgtgaaataagctataagctcatgatgaaa 39876675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 51709113 - 51709072
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  51709113 agcttataagctcgtgaaataagttataagctcatggtgaaa 51709072  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 1363837 - 1363868
Alignment:
Q  124 agcttataaactcgtgaaataagttataagct 155  Q
    ||||||||||||||||||||||||||||||||    
T  1363837 agcttataaactcgtgaaataagttataagct 1363868  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 39746984 - 39747032
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaataacatt 172  Q
    ||||||||| ||||||||||||||||||||||  || ||||| ||||||    
T  39746984 agcttataagctcgtgaaataagttataagctcgtggtgaaaaaacatt 39747032  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 46088030 - 46088061
Alignment:
Q  124 agcttataaactcgtgaaataagttataagct 155  Q
    ||||||||||||||||||||||||||||||||    
T  46088030 agcttataaactcgtgaaataagttataagct 46088061  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 7710984 - 7711025
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  7710984 agcttataagctcgtgaaataagctataagctcatgatgaaa 7711025  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 22099023 - 22098982
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  22099023 agcttataaactcgtgaaataagctataagctcatggtgaaa 22098982  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 29704114 - 29704155
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  29704114 agcttataagctcgtgaaataagttataagctcatggtgaaa 29704155  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 37672380 - 37672421
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  37672380 agcttataaactcgtgaaataagctataagctcatggtgaaa 37672421  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 39583201 - 39583160
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||| |||||||||||||||| ||| |||||    
T  39583201 agcttataaactcgttaaataagttataagctcatggtgaaa 39583160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 50540877 - 50540836
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||| ||||| |||||    
T  50540877 agcttataaactcgtgaaataagctataagtttatggtgaaa 50540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 4593 - 4559
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttat 158  Q
    ||||||||| |||||||||||||||||||||||||    
T  4593 agcttataagctcgtgaaataagttataagcttat 4559  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 40497442 - 40497476
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttat 158  Q
    ||||||||| |||||||||||||||||||||||||    
T  40497442 agcttataagctcgtgaaataagttataagcttat 40497476  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 18582942 - 18582901
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  18582942 agcttataagctcgtgaaataagttataagctcatggtgaaa 18582901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 39087604 - 39087645
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  39087604 agcttataaactcgtgaaataagctataagctcatggtgaaa 39087645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 55358384 - 55358425
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  55358384 agcttataagctcgtgaaataagttataagctcatggtgaaa 55358425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33574428 - 33574388
Alignment:
Q  129 ataaactcgtgaaataagttataagcttatgatgaaataac 169  Q
    |||| |||||||||||||||||||||| ||||| |||||||    
T  33574428 ataagctcgtgaaataagttataagctcatgataaaataac 33574388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 30222 - 30263
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  30222 agcttataaactcgtgaaataagctataagctcatggtgaaa 30263  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 40258959 - 40258918
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  40258959 agcttataagctcgtgaaataagttataagctcatggtgaaa 40258918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 17844646 - 17844598
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaataacatt 172  Q
    ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||    
T  17844646 agcttataagctcgtgaaataagctataagctcatggtgaaatagcatt 17844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 3636686 - 3636727
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||||||| |||||    
T  3636686 agcttataagctcgtgaaataagctataagcttatggtgaaa 3636727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 5301647 - 5301695
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaataacatt 172  Q
    ||||||||| ||||||||||||| |||||||| ||| ||||| ||||||    
T  5301647 agcttataagctcgtgaaataagctataagctcatggtgaaaaaacatt 5301695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 20717471 - 20717415
Alignment:
Q  142 ataagttataagcttatgatgaaataacatttatcaaataaggtttttcttgtcata 198  Q
    ||||| ||||||||  |||||||||||||||||||||| |||| |||| | ||||||    
T  20717471 ataagctataagctactgatgaaataacatttatcaaacaaggcttttttagtcata 20717415  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 8070662 - 8070703
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  8070662 agcttataagctcgtgaaataagttataagctcatggtgaaa 8070703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 10727929 - 10727888
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    |||||||||  |||||||||||| ||||||||||||||||||    
T  10727929 agcttataagttcgtgaaataagctataagcttatgatgaaa 10727888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 42132766 - 42132725
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  42132766 agcttataagctcgtgaaataagctataagctcatgatgaaa 42132725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 43135716 - 43135675
Alignment:
Q  124 agcttataaactcgtgaaataagttataagcttatgatgaaa 165  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  43135716 agcttataagctcgtgaaataagctataagctcatgatgaaa 43135675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 10864 - 10832
Alignment:
Q  124 agcttataaactcgtgaaataagttataagctt 156  Q
    ||||||||||||||||||||||| |||||||||    
T  10864 agcttataaactcgtgaaataagctataagctt 10832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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