View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15198_high_3 (Length: 388)
Name: NF15198_high_3
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15198_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 26966514 - 26966887
Alignment:
| Q |
1 |
caaataacagatccaattgtctttgctacttgagtcaagcaaactcattgatgggaagcaaaattaactacattaattacactattagctatctaaacaa |
100 |
Q |
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| T |
26966514 |
caaataacagatccaattgtctttgctacttgagtcaagcaaactcattcatgggaagcaaaattaactacattaattacactattagctatctaaacaa |
26966613 |
T |
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| Q |
101 |
acaactctttgcaagctcagcaaaatagtgaaccacattgagatatatgaacttcaaatagtaacataagctcaaaaatatgatacaaagattaaacaat |
200 |
Q |
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| T |
26966614 |
actactctttgcaagctcagcaaaatagtgaaccacattgagatatatgaacttcaaatagtaacataagctcaaaaatatgatacaaagattaaacaat |
26966713 |
T |
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| Q |
201 |
taacatttttgctcataaaatgattatat----nnnnnnnngtagtactaaccggtgaatgacggcaactggaaaaaggggagtgaaaaatgagagagag |
296 |
Q |
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| T |
26966714 |
taacatttttgctcataaaatgattatataaaaaaaaagaagtagtactaaccagtgaatgacggcaactggaagaaggggagtgaaaaatgagagagag |
26966813 |
T |
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| Q |
297 |
gaaggaaaaatagtgttggggctgaatttattaaggctaaacctaaattttttcgacgagattttcacagttcc |
370 |
Q |
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| T |
26966814 |
gaaggaaaaatagtgttggggctgaatttataaaggctaaacctaaatttttccgacgagtttttcacagttcc |
26966887 |
T |
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