View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15198_high_5 (Length: 263)
Name: NF15198_high_5
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15198_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 52 - 249
Target Start/End: Original strand, 28691642 - 28691830
Alignment:
| Q |
52 |
ttctttttccaaattggtactggtgagttaattcatcaatttagaacttaaaaactagtacacgtatactacagcaactaaagttacttgcctattgaaa |
151 |
Q |
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| T |
28691642 |
ttctttttccaaattggtactggtgagtt---tcatcaatttagaacttaaaaactagtacac------tactgcaactaacgttacttgcctattgaaa |
28691732 |
T |
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| Q |
152 |
ttgtcgattttaataggacgggtggcataaaaatctagcaggatatgatccatgtgcatcagattatactgcagcatacctaaataggccacaggttc |
249 |
Q |
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| T |
28691733 |
ttgtcaattttaataggacgggtggcataaaaatctagcaggatatgatccatgtgcatcagattatactgcagcatacctaaataggccagaggttc |
28691830 |
T |
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