View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15198_low_1 (Length: 884)
Name: NF15198_low_1
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15198_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 288 - 870
Target Start/End: Original strand, 27774770 - 27775353
Alignment:
| Q |
288 |
taccgtgataagatagataagctacacaaagagtt-aggtcacatatcatattgaattatgtgcatggcgtatgttcaaactgaatcacaccaagaaatt |
386 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774770 |
taccgtgataagatagataagctacacaaagagtttaggtcacatatcatattgaattatgtgcatggcgtatgttcaaactgaatcacaccaagaaatt |
27774869 |
T |
|
| Q |
387 |
gaacaagagttcccatagctgcagtctcacccctttgtagcagaagaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaa |
486 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774870 |
gaacaagaaatcccatagctgcagtctcacccctttgtagcagaaaaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaa |
27774969 |
T |
|
| Q |
487 |
agcgaaggtagacactttgaggaaatcggcacgtggattaagcagatggaacgaacatgaactagcactttttgtagtaaaaagacatggaacttcagct |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27774970 |
agcgaaggtagacactttgaggaaatcggcacgtggattaagcaaatggaacgaacatgaactagcactttttgtagtaaaaagagatggaacttcagct |
27775069 |
T |
|
| Q |
587 |
atgggagctcttgctgaacatataaggaagataaatgccatcacaactttattggaaggcaaaaaagcagcaattcttctgcagcttaaacatgtattgt |
686 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27775070 |
atgggagctcttgctgaacatataaggaagataaatgccatcacaactttattggaaggcaaaaaagcaacaattcttctgcagcttaaacatgtattgt |
27775169 |
T |
|
| Q |
687 |
ctcccaccttttatgttttgtcttgaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatacttaacat |
786 |
Q |
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| T |
27775170 |
ctcccaccttttatgttttgtctttaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatacttaacat |
27775269 |
T |
|
| Q |
787 |
ctaaataatcaagatgctgaaataatcttttagcctattcagttgagctcatatgctgaaataacatttgcccgatagaataat |
870 |
Q |
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| T |
27775270 |
ctaaataatcaagatgctgaaataatcttttagcctattcagttgagctcatatgctggaataacatttgcccgatagaataat |
27775353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 27774611 - 27774734
Alignment:
| Q |
129 |
ttctagttgttagctttactaattatatataactattacctcacaacctgaaatttgtgcgtcagcagaacaaagacaatatataaagccggcatttggg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774611 |
ttctagttgttagctttactaattatatataactattacctcacaacctgaaatttgtgcgtcagcagaacaaagacaatatataaagccggcatttggg |
27774710 |
T |
|
| Q |
229 |
aggcagaggggaacaaggtcttgg |
252 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
27774711 |
aggcagaggggaacaaggtcttgg |
27774734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 705 - 836
Target Start/End: Original strand, 27764322 - 27764453
Alignment:
| Q |
705 |
tgtcttgaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatacttaacatctaaataatcaagatgct |
804 |
Q |
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|||||||||||||| ||||| |||||||||||| ||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
27764322 |
tgtcttgaaagtttggtttggtattttagaattgattgcatctcaattcatcactattaatatctctaatcttacttaacatctaaataatcaagatgct |
27764421 |
T |
|
| Q |
805 |
gaaataatcttttagcctattcagttgagctc |
836 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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| T |
27764422 |
gaaataatcttttagcctattccgttgagctc |
27764453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 490 - 605
Target Start/End: Original strand, 27771530 - 27771645
Alignment:
| Q |
490 |
gaaggtagacactttgaggaaatcggcacgtggattaagcagatggaacgaacatgaactagcactttttgtagtaaaaagacatggaacttcagctatg |
589 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | || || ||||| ||| || |||| ||| |
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| T |
27771530 |
gaaggtagatagtttgaggaaattggcacatggattaagcagatggaacgaacatgaactagcactttctctattacaaagaggtgggacagcagccatg |
27771629 |
T |
|
| Q |
590 |
ggagctcttgctgaac |
605 |
Q |
| |
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||||||||||| |||| |
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| T |
27771630 |
ggagctcttgcggaac |
27771645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 27802226 - 27802129
Alignment:
| Q |
390 |
caagagttcccatagctgcagtctcacccctttgtagcagaagaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaaag |
488 |
Q |
| |
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|||||| |||||||||||||||| |||| |||||||||||| ||| |||||| | ||||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
27802226 |
caagagctcccatagctgcagtcccacctctttgtagcaga-gaaatgctagttcattctcgttccatacacttaattcccaagccaatttcctcaaag |
27802129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 697 - 817
Target Start/End: Original strand, 27799689 - 27799814
Alignment:
| Q |
697 |
ttatgttttgtcttgaaagtttagtttgttattttagaattaattgcatctatatccatcacaattattatctctaatcatactta-----acatctaaa |
791 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||| ||||||||||||||| | |||||||| |
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| T |
27799689 |
ttatgttttctcttgaaagtttagtttggtattttagaattaattgcatcttagtctatctctgttatcatctctaatcatactaattactccatctaaa |
27799788 |
T |
|
| Q |
792 |
taatcaagatgctgaaataatctttt |
817 |
Q |
| |
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||||||||||||| || ||||||||| |
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|
| T |
27799789 |
taatcaagatgctaaactaatctttt |
27799814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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