View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15198_low_2 (Length: 619)

Name: NF15198_low_2
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15198_low_2
NF15198_low_2
[»] chr3 (9 HSPs)
chr3 (17-259)||(38053790-38054032)
chr3 (291-603)||(38053446-38053758)
chr3 (383-461)||(33674384-33674462)
chr3 (389-463)||(32117962-32118036)
chr3 (372-463)||(36618090-36618178)
chr3 (198-257)||(28720846-28720905)
chr3 (396-463)||(54481485-54481552)
chr3 (389-463)||(9198038-9198112)
chr3 (383-463)||(32582597-32582676)
[»] scaffold0010 (1 HSPs)
scaffold0010 (390-463)||(166741-166814)
[»] chr1 (17 HSPs)
chr1 (388-463)||(32348408-32348483)
chr1 (383-463)||(3160991-3161071)
chr1 (383-463)||(21516493-21516573)
chr1 (389-463)||(28870462-28870536)
chr1 (413-463)||(35058687-35058737)
chr1 (390-463)||(1714030-1714103)
chr1 (386-454)||(5923865-5923933)
chr1 (390-462)||(31117590-31117662)
chr1 (396-456)||(32602949-32603009)
chr1 (389-463)||(7460255-7460328)
chr1 (413-463)||(22593522-22593572)
chr1 (399-457)||(31795352-31795410)
chr1 (389-462)||(35272478-35272552)
chr1 (402-463)||(3949641-3949702)
chr1 (410-463)||(4372812-4372865)
chr1 (413-462)||(35926534-35926583)
chr1 (415-463)||(23908839-23908887)
[»] chr8 (7 HSPs)
chr8 (389-463)||(28947309-28947383)
chr8 (381-463)||(35764727-35764809)
chr8 (389-463)||(2111017-2111091)
chr8 (389-462)||(43408677-43408750)
chr8 (413-463)||(8407589-8407639)
chr8 (382-461)||(925986-926065)
chr8 (390-457)||(37740756-37740823)
[»] chr4 (11 HSPs)
chr4 (389-463)||(34812665-34812739)
chr4 (389-456)||(52327445-52327512)
chr4 (182-257)||(30254010-30254085)
chr4 (381-463)||(39276515-39276597)
chr4 (383-431)||(30070328-30070376)
chr4 (404-463)||(44555579-44555638)
chr4 (389-463)||(2103188-2103262)
chr4 (401-458)||(41758661-41758718)
chr4 (391-447)||(27611812-27611868)
chr4 (391-463)||(37713455-37713527)
chr4 (415-463)||(50133287-50133335)
[»] chr6 (4 HSPs)
chr6 (389-463)||(29052699-29052773)
chr6 (413-462)||(8014439-8014488)
chr6 (389-463)||(34544426-34544500)
chr6 (413-462)||(2748302-2748351)
[»] chr2 (11 HSPs)
chr2 (389-463)||(30804367-30804441)
chr2 (413-460)||(42139530-42139577)
chr2 (383-463)||(8752611-8752690)
chr2 (399-463)||(15967966-15968030)
chr2 (389-463)||(5946559-5946633)
chr2 (421-463)||(27679233-27679275)
chr2 (417-461)||(33651184-33651228)
chr2 (416-463)||(21721922-21721969)
chr2 (396-462)||(27863873-27863939)
chr2 (422-463)||(18491969-18492010)
chr2 (402-463)||(21938041-21938102)
[»] chr7 (5 HSPs)
chr7 (389-458)||(2525296-2525365)
chr7 (390-448)||(15050624-15050682)
chr7 (393-463)||(15050970-15051040)
chr7 (383-461)||(3837088-3837161)
chr7 (383-463)||(13438306-13438386)
[»] chr5 (11 HSPs)
chr5 (396-463)||(17259609-17259676)
chr5 (390-463)||(31677296-31677369)
chr5 (412-456)||(13838741-13838785)
chr5 (199-257)||(11237677-11237735)
chr5 (389-462)||(6462239-6462311)
chr5 (402-459)||(32046916-32046973)
chr5 (421-463)||(1621439-1621481)
chr5 (392-462)||(9005331-9005401)
chr5 (413-463)||(17902790-17902840)
chr5 (389-463)||(34640181-34640255)
chr5 (402-463)||(28363542-28363603)
[»] scaffold0022 (1 HSPs)
scaffold0022 (390-463)||(84838-84911)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 38054032 - 38053790
Alignment:
Q  17 atgaaagagggattagtagaaggtaccgagttgcggaaaagatgtcatcaaacttcttctttaacgtggaaggatcttgaagtggccaatttgcttcatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38054032 atgaaagagggattagtagaaggtaccgagttgcggaaaagatgtcatcaaacttcttctttaacgtggaaggatcttgaagtggccaatttgcttcatc 38053933  T
Q  117 ttgatgaacgaatataacattttccaaaatggccttcgaaacacccatgagtgcaggaatctctcgatccatgtcagcacatctatagctaaggcaaact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053932 ttgatgaacgaatataacattttccaaaatggccttcgaaacacccatgagtgcaggaatctctcgatccatgtcagcacatctatagctaaggcaaact 38053833  T
Q  217 ttctaatagagcagagcaaacaggtcaagttaattcgagaact 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38053832 ttctaatagagcagagcaaacaggtcaagttaattcgagaact 38053790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 291 - 603
Target Start/End: Complemental strand, 38053758 - 38053446
Alignment:
Q  291 tcagccagtaaagtacataccataatataaatataaggaaattnnnnnnnnnnnnntacattttcaagaatttaaggctctgtttggtaataatagttga 390  Q
    |||||||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||||||||||||||    
T  38053758 tcagccagtaaagtacataccataatataaatataacgaaattaaaaaaaaaaaaaaacattttcaagaatttaaggctctgtttggtaataatagttga 38053659  T
Q  391 taagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacatnnnnnnntatatgcttaagctataagg 490  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        ||||| |||||||||||||    
T  38053658 taagctagctaatcgaatatggagtgtttagtaaaattagcagttgagatagcttataaatatgaaatgacataaaaaaaaatatgtttaagctataagg 38053559  T
Q  491 cagtgaaaataagttataagtctgataaaatggcagtggccaaacgagtgttttttgcttaagctggaatgaccttatgctaaaaatacccaagaagagt 590  Q
     |||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053558 tagtgaaaataagttatgagtctgaaaaaatgacagtgaccaaacgagtgttttttgcttaagctggaatgaccttatgctaaaaatacccaagaagagt 38053459  T
Q  591 gatacctcgccgg 603  Q
    |||||||||||||    
T  38053458 gatacctcgccgg 38053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 33674384 - 33674462
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgac 461  Q
    |||||||||||||||||| ||||||| || |||||||  |||||| ||||||||| |||||| ||||||||||| ||||    
T  33674384 atagttgataagctagctcattgaatttgtagtgtttgctaaaatcagcagttgaactagctcataaatatgaagtgac 33674462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 32118036 - 32117962
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| | ||||| |  ||||||| |||| |||||||| ||| |||||||||||||||||||| ||||    
T  32118036 gataagctagctgactgaatttttagtgtttggtaagattagcagctgaactagcttataaatatgaaataacat 32117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 36618178 - 36618090
Alignment:
Q  372 gtttggtaataatagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||| | ||| |||||||||||| |||||||| || ||||||  |||||||||||   ||| ||||||||| |||| ||||||||||    
T  36618178 gtttggtaaaattagctgataagctagccaattgaatttgtagtgttcggtaaaattagc---tgaactagcttatcaatacgaaatgacat 36618090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 28720905 - 28720846
Alignment:
Q  198 tctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa 257  Q
    ||||||| ||||| |||| ||| ||||||||||||||| |||||||| |||||| |||||    
T  28720905 tctatagttaaggtaaacattccaatagagcagagcaaccaggtcaaattaatttgagaa 28720846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 54481485 - 54481552
Alignment:
Q  396 tagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||||| |  |||||||  |||||||| | ||||||||| |||||||||||||||| ||||    
T  54481485 tagctaattgaatttatagtgtttgataaaattatctgttgagctaacttataaatatgaaataacat 54481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 9198038 - 9198112
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||| ||| | ||||||| || ||||||| ||||||||||  ||||| |||| || |||||||||||||||||    
T  9198038 gataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacat 9198112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 32582676 - 32582597
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||| |||||| |||| | ||||||| || ||||||| ||||||||||| | |||  |||||||||| |||||||||||||    
T  32582676 atagctgataacctagttgattgaatttgtagtgtttggtaaaattagccg-tgaagtagcttataagtatgaaatgacat 32582597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 166814 - 166741
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| ||||||| || ||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  166814 ataagctagctgattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacat 166741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 32348483 - 32348408
Alignment:
Q  388 tgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| | ||||||| || ||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  32348483 tgataagctagttgattgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaatgacat 32348408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 3161071 - 3160991
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||| ||||||||||| ||||||| || ||||||| ||||||||| |  |||| ||||| |||||||||||||||||||    
T  3161071 atagttaataagctagctgattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgacat 3160991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 21516493 - 21516573
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||| |||||||||||| ||||||| ||  |||||| ||||||||||  |||||  |||||| |||||||||||||||||    
T  21516493 atagtggataagctagctgattgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgacat 21516573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 28870462 - 28870536
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||| | ||||||| |  ||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||    
T  28870462 gataagctagtttattgaatttttagtgtttggtaaaattaacagttgaactagcttataaaaatgaaattacat 28870536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 35058737 - 35058687
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||    
T  35058737 agtgtttggtaaaattagcggttgaactaccttataaatatgaaatgacat 35058687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 1714030 - 1714103
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||| || ||||||| || ||||||| ||||||||| | |||||  ||| ||||||||||||||||||||    
T  1714030 ataagctaactgattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacat 1714103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 5923933 - 5923865
Alignment:
Q  386 gttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatg 454  Q
    ||||||||||||||| ||||||| |  ||||||| |||||||||   ||||| ||||||||||||||||    
T  5923933 gttgataagctagctgattgaatttttagtgtttggtaaaattaatggttgaactagcttataaatatg 5923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 31117590 - 31117662
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    ||||||||||| ||||||| || |||||||  ||||||||||  ||||  |||| ||||||||||||||||||    
T  31117590 ataagctagctgattgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaatgaca 31117662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 32603009 - 32602949
Alignment:
Q  396 tagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaa 456  Q
    ||||| ||||||| || ||||||||||||||||||  |||||  |||||||||||||||||    
T  32603009 tagctgattgaatttgtagtgtttagtaaaattagtggttgaagtagcttataaatatgaa 32602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 7460328 - 7460255
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||| | ||||||| || ||||||| ||||| ||||| ||| | |||||||||| ||||||||||||||    
T  7460328 gataagctagatgattgaatttgtagtgttt-gtaaacttagcggttaaactagcttatatatatgaaatgacat 7460255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 22593522 - 22593572
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||  ||||||||||||||   |||||||||||||||||||||||||    
T  22593522 agtgtttgataaaattagcagttcgactagcttataaatatgaaatgacat 22593572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 31795352 - 31795410
Alignment:
Q  399 ctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaa 457  Q
    |||||||||| || ||||||| |||||| || | ||||| |||||||||||||||||||    
T  31795352 ctaattgaatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 35272478 - 35272552
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagctt-ataaatatgaaatgaca 462  Q
    |||||||||||| ||||||| || ||||||||||||||||| | |||||  || ||| | |||||||||||||||    
T  35272478 gataagctagctgattgaatttgtagtgtttagtaaaattatcggttgaagtatcttaaaaaatatgaaatgaca 35272552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 3949641 - 3949702
Alignment:
Q  402 attgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| || ||||||| |||||||||||  |||| |||  ||||||||||||||||||||    
T  3949641 attgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacat 3949702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 4372812 - 4372865
Alignment:
Q  410 tggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||  ||| |||||| ||||| ||| |||||||||||||||||||||    
T  4372812 tggagtgttttctaagattagcggttgaactaacttataaatatgaaatgacat 4372865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 35926534 - 35926583
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    ||||||| ||||||||||  ||||| ||||||||||| ||||||||||||    
T  35926534 agtgtttggtaaaattagtggttgaactagcttataagtatgaaatgaca 35926583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 23908839 - 23908887
Alignment:
Q  415 tgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||| || |||||||  ||||| |||||||||||||||||||||||||    
T  23908839 tgtttggtgaaattagtggttgaactagcttataaatatgaaatgacat 23908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 28947309 - 28947383
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| ||||||| || |||||||||||||||| |  ||||| |||||||||||||||||||||||||    
T  28947309 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 28947383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 35764809 - 35764727
Alignment:
Q  381 taatagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||||| |||| | ||||||| || ||||||| ||||||||||| ||||| |||| ||||||||||||||||||||    
T  35764809 taatagttgataatctagttgattgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgacat 35764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 2111091 - 2111017
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||| || || ||||||| || ||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  2111091 gataagataactgattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacat 2111017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 43408750 - 43408677
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    |||||||||||  ||||||| || ||||||| |||||||||| | |||| ||||||||||||||||||||||||    
T  43408750 gataagctagccgattgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaatgaca 43408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 8407639 - 8407589
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  8407639 agtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacat 8407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 926065 - 925986
Alignment:
Q  382 aatagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgac 461  Q
    ||||| ||||||||||||| ||||||| ||  |||||| ||||||| ||  ||||| | |||||||||||||||||||||    
T  926065 aatagatgataagctagctgattgaatttgttgtgtttggtaaaatgagtggttgaaccagcttataaatatgaaatgac 925986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 457
Target Start/End: Complemental strand, 37740823 - 37740756
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaa 457  Q
    ||||||||||| ||||||| || |||||||  || ||||||| ||||| ||||||| |||||||||||    
T  37740823 ataagctagctgattgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatatgaaa 37740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 34812665 - 34812739
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| ||||||| || |||||||||||||||| |  ||||| |||||||||||||||||||||||||    
T  34812665 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 34812739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 52327512 - 52327445
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaa 456  Q
    ||||||||||||  |||||| || ||||||| ||||||||||||||||| ||||||||||||||||||    
T  52327512 gataagctagctggttgaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 30254010 - 30254085
Alignment:
Q  182 gatccatgtcagcacatctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa 257  Q
    |||| |||| ||||| | ||||| ||||| |||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  30254010 gatctatgtgagcacgtatatagttaaggtaaacattccaatagagcagagcaaccaggtcaagttaatttgagaa 30254085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 39276597 - 39276515
Alignment:
Q  381 taatagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||| | |||| |||||| ||||||| || ||||||| ||||||||||  ||||| ||||||||||||| | |||||||||    
T  39276597 taatagcttataacctagctgattgaatttgtagtgtttggtaaaattagtggttgaactagcttataaatcttaaatgacat 39276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 30070376 - 30070328
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagc 431  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||||||    
T  30070376 atagtggataagctagctaattgaatttgtagtgtttggtaaaattagc 30070328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 44555579 - 44555638
Alignment:
Q  404 tgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||| || ||||||| ||||||||||| ||| | ||| |||||||||||||||||||||    
T  44555579 tgaatctgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaatgacat 44555638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 2103188 - 2103262
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| ||||||| || ||||||| |||||||||   ||||| | | ||||||||||| |||||||||    
T  2103188 gataagctagcttattgaatttgtagtgtttggtaaaattaatggttgaacaaacttataaatataaaatgacat 2103262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 41758718 - 41758661
Alignment:
Q  401 aattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaat 458  Q
    |||||||| || ||||||  ||||||||||||||||| ||| | ||||||||||||||    
T  41758718 aattgaatttgtagtgttcggtaaaattagcagttgaactaacgtataaatatgaaat 41758661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 27611812 - 27611868
Alignment:
Q  391 taagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttat 447  Q
    |||||||| | ||||||| || ||||||| ||||||||||||||||| ||| |||||    
T  27611812 taagctagttgattgaatttgtagtgtttggtaaaattagcagttgaactaacttat 27611868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 37713527 - 37713455
Alignment:
Q  391 taagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||| |||||||| || | ||||  ||||||||||  |  || |||||||||||||||||||||||||    
T  37713527 taagctagcaaattgaatttgtaatgttgggtaaaattagttgcggaactagcttataaatatgaaatgacat 37713455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 50133335 - 50133287
Alignment:
Q  415 tgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||| ||||||||||  ||||| ||||||||||||||| |||||||||    
T  50133335 tgtttggtaaaattagatgttgaactagcttataaatatcaaatgacat 50133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 29052773 - 29052699
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| ||||||| || ||||||| ||||||| ||| ||| | |||||||||||||||||||||||||    
T  29052773 gataagctagctgattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaatatgaaatgacat 29052699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 8014439 - 8014488
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    ||||||| |||||||||||||| || |||||||||||| |||||||||||    
T  8014439 agtgtttggtaaaattagcagtcgaactagcttataaacatgaaatgaca 8014488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 34544500 - 34544426
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||   |||||| || |||||||  || ||||||  ||||| |||||||||||||||||||||||||    
T  34544500 gataagctagcgggttgaatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaatgacat 34544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 2748302 - 2748351
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    |||||||| |||||||| | ||||| |||| |||||||||||||||||||    
T  2748302 agtgtttaataaaattaacggttgaactagtttataaatatgaaatgaca 2748351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 30804367 - 30804441
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||| |||||||||| || ||||||| ||||||||||| ||||| |||| |||||| |||||||||||||    
T  30804367 gataagctaactaattgaatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaatgacat 30804441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 42139577 - 42139530
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatga 460  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  42139577 agtgtttggtaaaattagcagttgaactagcttataaatatgaaatga 42139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 8752690 - 8752611
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||||||| |||||||||| || ||| ||| |||||||  ||| ||||  ||||||||||||||||||||||||    
T  8752690 atagttgataagctaactaattgaatttgtagt-tttggtaaaatctgcatttgaattagcttataaatatgaaatgacat 8752611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 15968030 - 15967966
Alignment:
Q  399 ctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||| ||| || |||| || ||||||||||| ||||| |||||||||||||||||||||||||    
T  15968030 ctaattcaatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaatgacat 15967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 5946559 - 5946633
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||| || |||||||||| |||| ||||| |||||||  |||||  |||||| |||||||||||||||||    
T  5946559 gataagctaactgattgaatatgtagtgcttagtcaaattagttgttgaagtagcttgtaaatatgaaatgacat 5946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 463
Target Start/End: Complemental strand, 27679275 - 27679233
Alignment:
Q  421 gtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  27679275 gtaaaattagcggttgaactagcttataaatatgaaatgacat 27679233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 33651184 - 33651228
Alignment:
Q  417 tttagtaaaattagcagttgagctagcttataaatatgaaatgac 461  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||    
T  33651184 tttagtaaaattagcagttgaactaacttacaaatatgaaatgac 33651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 21721969 - 21721922
Alignment:
Q  416 gtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||| |||||||||||||||||  |||||||||||||| |||||||||    
T  21721969 gtttggtaaaattagcagttgaaatagcttataaatataaaatgacat 21721922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 27863939 - 27863873
Alignment:
Q  396 tagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    ||||| ||||||| || |||||||  |||||||| | |||||| |||||||||||| ||||||||||    
T  27863939 tagctgattgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaatgaca 27863873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 18492010 - 18491969
Alignment:
Q  422 taaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||||||| ||| ||||| |||||||||||||||    
T  18492010 taaaattagcagttgaactaacttattaatatgaaatgacat 18491969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 21938102 - 21938041
Alignment:
Q  402 attgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| || ||||||||||||||||| | |||||  || ||||||||||| |||||||||    
T  21938102 attgaatttgcagtgtttagtaaaattaacggttgaaatatcttataaatataaaatgacat 21938041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 458
Target Start/End: Complemental strand, 2525365 - 2525296
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaat 458  Q
    |||||||||||| ||||||| || | ||||| ||||||||||||| ||| ||||||||||||||||||||    
T  2525365 gataagctagctgattgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaat 2525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 15050682 - 15050624
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttata 448  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||| ||| ||||||    
T  15050682 ataagctagcttattgaatctgcagtgtttagtaaaattagcagttgaactaacttata 15050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 463
Target Start/End: Complemental strand, 15051040 - 15050970
Alignment:
Q  393 agctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||| ||||||| | |||||||| ||||||||||  ||||| ||||||||| | |||||||||||||    
T  15051040 agctagctgattgaatttagagtgtttggtaaaattagtggttgaactagcttatgagtatgaaatgacat 15050970  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 3837161 - 3837088
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgac 461  Q
    |||||||||||||||| |||||     || ||||||| ||||||||||| |||||  ||||||||||||||| ||||||    
T  3837161 atagttgataagctagataatt-----tgtagtgtttggtaaaattagccgttgaagtagcttataaatatgtaatgac 3837088  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 13438306 - 13438386
Alignment:
Q  383 atagttgataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||| |||| |||||||| ||| ||| || ||||||| || |||||||| ||| | ||| ||||||||||| |||||||||    
T  13438306 atagctgatgagctagcttattaaatttgtagtgtttggttaaattagcggttaaactaacttataaatataaaatgacat 13438386  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 17259676 - 17259609
Alignment:
Q  396 tagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||| ||||||| || |||| |||||||||||||| ||||| ||||||||||| |||||||||||||    
T  17259676 tagctgattgaatttgcagtggttagtaaaattagcggttgaactagcttataagtatgaaatgacat 17259609  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 31677369 - 31677296
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| ||||||| |  ||||||| |||||| |||| ||||| |||||||| ||||||||||||||||    
T  31677369 ataagctagctgattgaatttacagtgtttggtaaaactagcggttgaactagcttacaaatatgaaatgacat 31677296  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 13838741 - 13838785
Alignment:
Q  412 gagtgtttagtaaaattagcagttgagctagcttataaatatgaa 456  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  13838741 gagtgtttagtaaaattagcagttgaactagcttataattatgaa 13838785  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 11237735 - 11237677
Alignment:
Q  199 ctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa 257  Q
    |||||| ||||| |||| ||||||||||| ||||||| ||||||||||||||| |||||    
T  11237735 ctatagttaaggtaaacattctaatagagtagagcaaccaggtcaagttaatttgagaa 11237677  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 6462239 - 6462311
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    |||||||||||| ||||||| || ||||||||||||||||||| | | |  ||| |||||||||||||||||||    
T  6462239 gataagctagctgattgaatttgtagtgtttagtaaaattagcggctca-ttaggttataaatatgaaatgaca 6462311  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 32046973 - 32046916
Alignment:
Q  402 attgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatg 459  Q
    ||||||| |||||||||| |||| |||||| ||||| ||||||| |||||||||||||    
T  32046973 attgaatttggagtgtttggtaatattagcggttgaactagcttttaaatatgaaatg 32046916  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 1621439 - 1621481
Alignment:
Q  421 gtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| |||||  ||||||||||||||||||||||||    
T  1621439 gtaaaattagcggttgaagtagcttataaatatgaaatgacat 1621481  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 9005401 - 9005331
Alignment:
Q  392 aagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgaca 462  Q
    |||||| || ||||||| || ||||||||||| ||||| |||||||  ||||||| || ||||||||||||    
T  9005401 aagctaactgattgaatttgtagtgtttagtacaattaacagttgaagtagcttaaaagtatgaaatgaca 9005331  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 17902840 - 17902790
Alignment:
Q  413 agtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| |||||| |||||||||| |||||||||||||||| | ||||||    
T  17902840 agtgtttggtaaaactagcagttgaactagcttataaatatgtattgacat 17902790  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 34640255 - 34640181
Alignment:
Q  389 gataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    |||||||||||| ||||||| || | ||||| ||||||||||  |||    ||||||||||||||||||||||||    
T  34640255 gataagctagcttattgaatttgtaatgtttggtaaaattagtggttattgtagcttataaatatgaaatgacat 34640181  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 28363603 - 28363542
Alignment:
Q  402 attgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||| || ||||||| |||| |||||| ||||| |||| |||||| |||||||||||||    
T  28363603 attgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgacat 28363542  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 84838 - 84911
Alignment:
Q  390 ataagctagctaattgaatatggagtgtttagtaaaattagcagttgagctagcttataaatatgaaatgacat 463  Q
    ||||||||||| ||||| | || ||| |||  ||||||||||||||||  ||||||||| ||||||||||||||    
T  84838 ataagctagcttattgattttgtagtatttgttaaaattagcagttgaagtagcttatagatatgaaatgacat 84911  T

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