View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15198_low_6 (Length: 351)
Name: NF15198_low_6
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15198_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 5163795 - 5163461
Alignment:
| Q |
1 |
tttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctgtccatgtcttacaaatttcccctgctttgtgc |
100 |
Q |
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| T |
5163795 |
tttgatgcccctaaaataatagtgccctaggctgtcgtccctcccgcccaccctctggaccacccctgtccatgtcttacaaatttcccctgctttgtgc |
5163696 |
T |
|
| Q |
101 |
accactattttcctttgnnnnnnnaaa-gtgatttaattgctttaagatttgacaacttgttcttactttccattttttaaggtggctttgttgctaatt |
199 |
Q |
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| T |
5163695 |
accactattttcctttgtttttttaaaagtgatttaattgctttaagatttgacaacttgttcttactttccattttttaaggtggctttgttgctaatt |
5163596 |
T |
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| Q |
200 |
caatttcaaaaagataaaaagtattagatgccatgtacatatgagagggagaggcaccatttcttctactacattcccaccaaaaagatgcctttcaatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5163595 |
caatttcaaaaagataaaaagtattagatgccatgtacatatgagagggagaggcaccatttctactactacattcccaccaaaaagatgcctttcaatg |
5163496 |
T |
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| Q |
300 |
ttcatagaatagaaggttcaattgtccaccaagag |
334 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
5163495 |
ttcaaagaatagaaggttcaattgtccaccaagag |
5163461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 2887160 - 2887217
Alignment:
| Q |
8 |
cccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccaccc |
65 |
Q |
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|||||||||||||||||||||||| || || ||||||| |||||||| || |||||| |
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| T |
2887160 |
cccctaaaataatggtgccctagattgccgcccctcccacccaccctcagggccaccc |
2887217 |
T |
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