View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15198_low_9 (Length: 238)

Name: NF15198_low_9
Description: NF15198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15198_low_9
NF15198_low_9
[»] chr7 (5 HSPs)
chr7 (22-238)||(29952874-29953089)
chr7 (83-190)||(31035887-31035994)
chr7 (83-172)||(24276720-24276810)
chr7 (90-174)||(23804818-23804902)
chr7 (84-173)||(25023752-25023842)
[»] chr3 (17 HSPs)
chr3 (26-201)||(33776632-33776806)
chr3 (27-199)||(53682211-53682382)
chr3 (27-190)||(46986658-46986822)
chr3 (86-210)||(16415958-16416083)
chr3 (86-210)||(18516932-18517056)
chr3 (26-208)||(47041258-47041441)
chr3 (83-207)||(30381958-30382083)
chr3 (26-190)||(20844544-20844708)
chr3 (50-183)||(46279290-46279423)
chr3 (83-174)||(24130458-24130550)
chr3 (84-170)||(15667369-15667454)
chr3 (83-172)||(9740946-9741037)
chr3 (83-173)||(47472735-47472830)
chr3 (125-201)||(19153034-19153110)
chr3 (84-174)||(3858813-3858903)
chr3 (127-174)||(24989266-24989313)
chr3 (86-174)||(55194388-55194476)
[»] chr8 (7 HSPs)
chr8 (49-209)||(41504779-41504939)
chr8 (26-197)||(10869802-10869971)
chr8 (37-208)||(8882454-8882623)
chr8 (49-172)||(24592384-24592508)
chr8 (85-160)||(13153111-13153187)
chr8 (127-172)||(14446280-14446325)
chr8 (142-174)||(40146451-40146483)
[»] chr5 (8 HSPs)
chr5 (26-209)||(19576381-19576564)
chr5 (27-190)||(8911565-8911728)
chr5 (83-201)||(39021502-39021621)
chr5 (83-209)||(4785163-4785290)
chr5 (84-174)||(27169524-27169615)
chr5 (84-169)||(40813189-40813275)
chr5 (126-174)||(15731326-15731375)
chr5 (84-158)||(22713753-22713828)
[»] chr6 (6 HSPs)
chr6 (88-195)||(23302864-23302971)
chr6 (26-201)||(7990290-7990467)
chr6 (85-173)||(2226487-2226576)
chr6 (85-173)||(12648838-12648927)
chr6 (26-174)||(12181251-12181398)
chr6 (126-174)||(25339871-25339918)
[»] chr2 (7 HSPs)
chr2 (31-193)||(31410374-31410537)
chr2 (84-173)||(27925700-27925790)
chr2 (84-168)||(31708827-31708911)
chr2 (26-173)||(30546999-30547145)
chr2 (84-174)||(34318482-34318573)
chr2 (122-170)||(45262097-45262145)
chr2 (26-72)||(28840419-28840465)
[»] chr1 (11 HSPs)
chr1 (26-192)||(29639782-29639947)
chr1 (26-208)||(49868071-49868252)
chr1 (83-192)||(6078537-6078646)
chr1 (86-207)||(44196327-44196450)
chr1 (90-174)||(48607345-48607429)
chr1 (84-174)||(9636454-9636545)
chr1 (85-174)||(32380276-32380366)
chr1 (50-174)||(30559733-30559857)
chr1 (83-200)||(22785699-22785815)
chr1 (83-159)||(31637576-31637653)
chr1 (144-208)||(14201411-14201475)
[»] chr4 (9 HSPs)
chr4 (39-208)||(45586439-45586608)
chr4 (26-196)||(47299916-47300085)
chr4 (93-210)||(21403041-21403159)
chr4 (83-174)||(56039708-56039800)
chr4 (89-174)||(10985137-10985223)
chr4 (84-168)||(53693516-53693601)
chr4 (89-174)||(24105140-24105223)
chr4 (96-174)||(17358824-17358903)
chr4 (84-173)||(4324953-4325042)
[»] scaffold0178 (1 HSPs)
scaffold0178 (84-174)||(17100-17191)
[»] scaffold0002 (1 HSPs)
scaffold0002 (85-173)||(435676-435764)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 29953089 - 29952874
Alignment:
Q  22 ctggctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattat 121  Q
    |||||||||||| ||||||||||||  |  ||||||||||||||||||||| ||       | ||||||||||||||||||||||||||||||||||| |    
T  29953089 ctggctgtcatttcaaaatgactgtcacgacatgttttccacctttacctacggaaaaaatc-gtaggtaattctaaggagaccgttttaaatacatttt 29952991  T
Q  122 gatatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactgagccaaaacatga 221  Q
    || ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||  ||||    
T  29952990 gacatctacctacggttgcatctgttactaaaactaatcgttgttttattttacccagactccaaaaaatttctgacttcgccactgagccaaagtatga 29952891  T
Q  222 cagattgaaacatcttc 238  Q
    |||||||||||||||||    
T  29952890 cagattgaaacatcttc 29952874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 31035994 - 31035887
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatgatatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagct 182  Q
    ||||||||||||||||||||||| ||||||| |||| ||||  |||||| |||||||| ||||||||||||| ||||| |||||||||||| ||||  ||    
T  31035994 ccgtaggtaattctaaggagaccattttaaaaacatcatgacctctaccgacggttgcggctgtcactaaaatttatcattgttttattttgcccagact 31035895  T
Q  183 ccaaaaaa 190  Q
    ||||||||    
T  31035894 ccaaaaaa 31035887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 24276810 - 24276720
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatgat-atctacctacggttgcagctgtcactaaaacttatcgttgttttattt 172  Q
    |||||||||| |||||||||||| ||||||| |||||||||  |||| ||||||||||| ||||||| ||||||||||| |||||||||||    
T  24276810 ccgtaggtaactctaaggagaccattttaaaaacattatgaacatcttcctacggttgcggctgtcagtaaaacttatcattgttttattt 24276720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 23804902 - 23804818
Alignment:
Q  90 taattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||||||||||  ||| ||||||| |||||| | |||||||||||||| ||| ||| ||||||||||||||| |||||||||||||    
T  23804902 taattctaaggttaccattttaaa-acattaaggatatctacctacggctgcggctatcactaaaacttatcattgttttatttta 23804818  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 25023752 - 25023842
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattat-gatatctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    |||||||||||||||||| | | ||||||| |  |||| ||  ||||||||| ||||| ||||||| ||||||||||| || |||||||||    
T  25023752 cgtaggtaattctaaggatatcattttaaaaattttatagagttctacctaccgttgcggctgtcattaaaacttatcattattttatttt 25023842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 33776632 - 33776806
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgata 125  Q
    |||||||||| ||||||||||  | | |||||||||||||||||||| ||       || |||||||||||||||||||||||||||| |||||||||      
T  33776632 ctgtcattgccaaatgactgtcaccgtatgttttccacctttacctacggaaaaaa-ccataggtaattctaaggagaccgttttaaaaacattatgacc 33776730  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactcc 201  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||    
T  33776731 tctacctacggttgcggctgtcactaaaacttatcgttgttttattttgcccaggctccaaaaaaaatctgactcc 33776806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 53682211 - 53682382
Alignment:
Q  27 tgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgatat 126  Q
    ||||||||| ||||||||||  ||||| |||||||||||||||||||||       ||||||||||||||||| ||||| ||||||| |||||||||  |    
T  53682211 tgtcattgccaaatgactgtcactgcaagttttccacctttacctatggaaaaaa-ccgtaggtaattctaagaagaccattttaaaaacattatgacct 53682309  T
Q  127 ctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgact 199  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||  ||| ||||||||||||| ||||||    
T  53682310 ctacctacagttgcggctgtcactaaaacttattgttgttttattttgtccaggctccaaaaaattcctgact 53682382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 46986658 - 46986822
Alignment:
Q  27 tgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-ata 125  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||| ||        |||||||||||||||||||||| ||||||| ||||| || |      
T  46986658 tgtcattgctaaatgactgtcactgcatgttttccatctttacctacggaaaaaaatcgtaggtaattctaaggagaccattttaaaaacattttggacc 46986757  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaa 190  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  46986758 tctacctacggttgcggctgtcactaaaacttatcgttgttttattttgcccaggctccaaaaaa 46986822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 16415958 - 16416083
Alignment:
Q  86 taggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctcc 184  Q
    |||||||||||||||||||| ||||||| |||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  16415958 taggtaattctaaggagaccattttaaaaacattatggacttctacctatggttgcagctgtcactaaaacttatcgttgttttattttgcccaggctcc 16416057  T
Q  185 aaaaaatttctgactccaccactgag 210  Q
    |||||| ||||| |||| ||||||||    
T  16416058 aaaaaaattctggctccgccactgag 16416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 18516932 - 18517056
Alignment:
Q  86 taggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctcc 184  Q
    |||||||||||||||||||| ||||||| |||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  18516932 taggtaattctaaggagaccattttaaaaacattatggacttctacctatggttgcagctgtcactaaaacttatcgttgttttattttgcccaggctcc 18517031  T
Q  185 aaaaaatttctgactccaccactgag 210  Q
    |||||| ||||| |||| ||||||||    
T  18517032 aaaaaa-ttctggctccgccactgag 18517056  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 47041258 - 47041441
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-at 124  Q
    ||||||| || ||||||||||  |||||||||||||||||||||||| ||       ||||||||||||||||||||||| ||||||| | |||||| |     
T  47041258 ctgtcatagccaaatgactgtcactgcatgttttccacctttacctacggaaaaaa-ccgtaggtaattctaaggagaccattttaaaaatattatggac 47041356  T
Q  125 atctacctacgg-ttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactg 208  Q
     ||||||||||| |||| ||||||| |||||||||||||||||||||||| || | ||||||||||||| ||| |||| ||||||    
T  47041357 ctctacctacgggttgcggctgtcattaaaacttatcgttgttttattttgcctaggctccaaaaaattcctggctccgccactg 47041441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 30381958 - 30382083
Alignment:
Q  83 ccgtaggtaa-ttctaaggagaccgttttaaatacattatgatatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagc 181  Q
    |||||||||| || |||||||||| ||||||| |||| || |  | ||||||||||||| |||||||||||||||||||||||||||||||| ||||  |    
T  30381958 ccgtaggtaaattataaggagaccattttaaaaacatcataacctatacctacggttgcggctgtcactaaaacttatcgttgttttattttgcccagac 30382057  T
Q  182 tccaaaaaatttctgactccaccact 207  Q
    ||||||||||| ||||||||||||||    
T  30382058 tccaaaaaattcctgactccaccact 30382083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 20844544 - 20844708
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-at 124  Q
    |||||||||  ||||||||||   ||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||| |  ||||| |     
T  20844544 ctgtcattgtcaaatgactgtcattgcatgttttccacctttacctatggaaaaaa-ccgtaggtaattctaaggagaccattttaaaaaatttatggac 20844642  T
Q  125 atctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaa 190  Q
     ||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||||    
T  20844643 ctcttcctacggttgcggctgtcactaaaacttaccgttgttttattttgcccagactccaaaaaa 20844708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 46279423 - 46279290
Alignment:
Q  50 tgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtca 148  Q
    ||||||||||||||||||||||| ||       | ||||||||||||||||||||| ||||||| | |||||| |  | ||||||||||||   ||||||    
T  46279423 tgcatgttttccacctttacctacggaaaaaatc-gtaggtaattctaaggagaccattttaaaaatattatggacctatacctacggttgtgactgtca 46279325  T
Q  149 ctaaaacttatcgttgttttattttacccaagctc 183  Q
    ||||| |||||| |||||||||||| |||||||||    
T  46279324 ctaaaccttatcattgttttattttgcccaagctc 46279290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 24130550 - 24130458
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattat-gatatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||||||||||||||| |||||||||||||| ||| ||| || || ||||||| ||| | | ||||||||||||||||| |||||||||||||    
T  24130550 ccgtaggtaattctaaagagaccgttttaaaaacagtatggacatttacctacagttacggttgtcactaaaacttatcattgttttatttta 24130458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 15667369 - 15667454
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacatta-tgatatctacctacggttgcagctgtcactaaaacttatcgttgttttat 170  Q
    |||||||||||||||||||||| ||||||| |||||| |||  ||||||||||||||| ||  ||||||||||||||  |||||||||    
T  15667369 cgtaggtaattctaaggagaccattttaaaaacattattgacctctacctacggttgcggc--tcactaaaacttattattgttttat 15667454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 9740946 - 9741037
Alignment:
Q  83 ccgtaggtaatt-ctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattt 172  Q
    |||||||||||| ||||||||||| ||||||| |||||||| |  ||||||||||||| |  |||||||||||||||||| ||||| |||||    
T  9740946 ccgtaggtaatttctaaggagaccattttaaaaacattatggacctctacctacggttacgactgtcactaaaacttatcattgttatattt 9741037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 47472735 - 47472830
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattat-----gatatctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    ||||||||||||||||||| ||| ||||||| |||||||     ||  ||||||||||||||| |||||||||||||| |||| ||||||| ||||    
T  47472735 ccgtaggtaattctaaggataccattttaaaaacattatctaaggacctctacctacggttgcggctgtcactaaaacctatcattgttttttttt 47472830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 19153034 - 19153110
Alignment:
Q  125 atctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactcc 201  Q
    ||||||||||||||| || | ||||||||||||||| |||||||||||| ||||| ||  | ||||||||| |||||    
T  19153034 atctacctacggttgtagatatcactaaaacttatcattgttttattttgcccaaactttataaaatttctaactcc 19153110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 3858903 - 3858813
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||||||| ||| |  ||||||| ||| |||| |  |||||||||||| || ||||||||||||| ||||| |||||||||||||    
T  3858903 cgtaggtaattctaatgaggctattttaaaaacaatatggacttctacctacggt-gcggctgtcactaaaatttatcattgttttatttta 3858813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 24989313 - 24989266
Alignment:
Q  127 ctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||| ||| ||||| ||||||||||||||||||| |||||||||||||    
T  24989313 ctacttacagttgcggctgtcactaaaacttatcattgttttatttta 24989266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 55194388 - 55194476
Alignment:
Q  86 taggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||| | |||||||||| ||||||| | |||||| |  |||||||||||||||  ||| |||||||||||| | |||||||||||||    
T  55194388 taggtaactataaggagaccattttaaaaatattatggacttctacctacggttgcgactg-cactaaaacttaacattgttttatttta 55194476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 41504779 - 41504939
Alignment:
Q  49 ctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtc 147  Q
    |||||||||||||||||||||||| ||       ||||||||||||||||||||||| ||||||| |||||| | | |||||||||||||||||||||||    
T  41504779 ctgcatgttttccacctttacctacggaaaaaa-ccgtaggtaattctaaggagaccattttaaaaacattacggacatctacctacggttgcagctgtc 41504877  T
Q  148 actaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactga 209  Q
    ||||||||||||| |||||||||||| |||||||||||||||| || || |||| |||||||    
T  41504878 actaaaacttatcattgttttattttgcccaagctccaaaaaaattatggctccgccactga 41504939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 10869802 - 10869971
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgata 125  Q
    |||||||||| |||| ||||| |||||| ||||||||| |||||||| ||       || |||||||||||| ||||||| ||||||| |||| ||||||    
T  10869802 ctgtcattgccaaataactgtcgctgcaagttttccacttttacctacggaaaaaa-ccataggtaattcta-ggagaccattttaaaaacatcatgata 10869899  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctga 197  Q
    |||||||||| |||| ||||||||||||| ||||| |||||||||||| | ||| ||| |||||||||||||    
T  10869900 tctacctacgattgcggctgtcactaaaatttatcattgttttattttgctcaaactctaaaaaatttctga 10869971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 8882623 - 8882454
Alignment:
Q  37 aaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgatatctacctacgg 136  Q
    ||||||||||  ||||| |||||||||||||||||| ||       |||||||||||||||| |||||  ||||||| ||||||| |  ||||||||| |    
T  8882623 aaatgactgtcactgcaagttttccacctttacctacggaaaaaa-ccgtaggtaattctaaagagacaattttaaaaacattat-acctctacctacag 8882526  T
Q  137 ttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactg 208  Q
    |||| | |||||||||||||||| ||||||||||||| |||| ||||||||||||| ||| |||| ||||||    
T  8882525 ttgcggttgtcactaaaacttattgttgttttattttgcccaggctccaaaaaattcctggctccgccactg 8882454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 24592508 - 24592384
Alignment:
Q  49 ctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacatt--atgatatctacctacggttgcagctgt 146  Q
    |||||||||||||| ||||||||| ||       ||||||||||||||||||| ||| ||||||| |||||  | ||  |||||||||| |||| |||||    
T  24592508 ctgcatgttttccatctttaccta-gggacaaaaccgtaggtaattctaaggataccattttaaaaacatttaaggacctctacctacgattgcggctgt 24592410  T
Q  147 cactaaaacttatcgttgttttattt 172  Q
    |||||||| ||||| |||||||||||    
T  24592409 cactaaaatttatcattgttttattt 24592384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 13153187 - 13153111
Alignment:
Q  85 gtaggtaattctaaggagaccgtttt-aaatacattat-gatatctacctacggttgcagctgtcactaaaacttatc 160  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||  | ||||||||||||||||||    
T  13153187 gtaggtaattctaaggagaccattttaaaatacattatggatctctacctacggtttga-ctgtcactaaaacttatc 13153111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 14446280 - 14446325
Alignment:
Q  127 ctacctacggttgcagctgtcactaaaacttatcgttgttttattt 172  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||    
T  14446280 ctacctacggttgccgctgtcactaaaatttatcattgttttattt 14446325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 40146483 - 40146451
Alignment:
Q  142 gctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||||||||||| |||||||||||||    
T  40146483 gctgtcactaaaacttatcattgttttatttta 40146451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 19576381 - 19576564
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-at 124  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||| ||       ||||||||||||||||||||||| ||||||| |||||||| |     
T  19576381 ctgtcattgccaaatgactgtcattgcatgttttccacctttacctacggaaaaaa-ccgtaggtaattctaaggagaccattttaaaaacattatggac 19576479  T
Q  125 atctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactga 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||| ||||| |||  |||||||    
T  19576480 ctctacctacggttgcggctgtcactaaaacttatcgttgttttattttgcctaggctccaaaaaaattctggctctgccactga 19576564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 8911565 - 8911728
Alignment:
Q  27 tgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-ata 125  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||| |        |||||||||||||||| |||||| ||||||| | |||||| |      
T  8911565 tgtcattgccaaatgactgtcactgcatgttttccacctttacctacg-aaaaaaaccgtaggtaattctaatgagaccattttaaaaatattatggacc 8911663  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaa 190  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||    
T  8911664 tctatctacggttgcggcggtcactaaaacttatcgttgttttattttgcccaggctccaaaaaa 8911728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 39021621 - 39021502
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagc 181  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || |||||||||||||||  |||||||||||||||||||||||||||||||  |||  |    
T  39021621 ccgtaggtaattctaaggagaccattttaaaaacatcatggatctctacctacggttgcgactgtcactaaaacttatcgttgttttattttttccagac 39021522  T
Q  182 tccaaaaaatttctgactcc 201  Q
    |||||||||||  |||||||    
T  39021521 tccaaaaaattcatgactcc 39021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 4785163 - 4785290
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagc 181  Q
    ||||| |||||||||||||| || ||||||| |||||||| |  |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  4785163 ccgtaagtaattctaaggagtccattttaaaaacattatggacctctacctacggttgtagctgtcactaaaacttatcattgttttattttgcccaagc 4785262  T
Q  182 tccaaaaaatttctgactccaccactga 209  Q
    |  | ||||||||| ||| | |||||||    
T  4785263 tttataaaatttctaacttcgccactga 4785290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 27169615 - 27169524
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatgatat-ctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||| |||| |||||||||||| ||||||| |||||||| | | ||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  27169615 cgtatgtaactctaaggagaccattttaaaaacattatggtcttctacctacgattgcggctgtcactaaaacttatcattgttttatttta 27169524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 40813189 - 40813275
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgtttta 169  Q
    ||||||||||||||| || ||| ||||||| |||||| | |  ||||||||||||||| |||||| |||||||||||| ||||||||    
T  40813189 cgtaggtaattctaaagataccattttaaaaacattaaggacctctacctacggttgcggctgtcgctaaaacttatcattgtttta 40813275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 15731375 - 15731326
Alignment:
Q  126 tctacctacggttgcagctgtcactaaaactta-tcgttgttttatttta 174  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  15731375 tctacctacggttgcggctgtcactaaaacttattcattgttttatttta 15731326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 22713828 - 22713753
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaactta 158  Q
    |||| |||||||||| |||||| ||||||| |||||||| || ||||| ||||||||   ||||||||||||||||    
T  22713828 cgtatgtaattctaaagagaccattttaaaaacattatggatctctacatacggttgtgactgtcactaaaactta 22713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 23302864 - 23302971
Alignment:
Q  88 ggtaattctaaggagaccgttttaaatacattatgatatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaa 187  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||     
T  23302864 ggtaattttaaagagaccgttttaaatacattatgacctctacctacggttgcagctgtcactaaaacttatcgttgttttattttgccgaagctccaac 23302963  T
Q  188 aaatttct 195  Q
    ||||||||    
T  23302964 aaatttct 23302971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 7990467 - 7990290
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattat-gat 124  Q
    |||||||||| |||||||||   ||||||||||||||| |||||||| ||       ||||||||||||||||||||||| ||||||| ||||||| ||     
T  7990467 ctgtcattgccaaatgactgccactgcatgttttccacatttacctacggaaaaaaaccgtaggtaattctaaggagaccattttaaaaacattatagac 7990368  T
Q  125 atctacctacggttg-cagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactcc 201  Q
     |||||||| ||||| | ||||||||||||||||||| |||||||||||| ||||  |||||||||||| ||| ||||    
T  7990367 ctctacctatggttggcggctgtcactaaaacttatcattgttttattttgcccagactccaaaaaattcctggctcc 7990290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 2226487 - 2226576
Alignment:
Q  85 gtaggtaattctaaggagaccgttttaaatacattatgata-tctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    ||||||||||||||||||||  ||||||| | |||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2226487 gtaggtaattctaaggagacgattttaaaaatattatgaacctctacctacggttacagctgtcactaaaacttatcgttgttttatttt 2226576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 12648838 - 12648927
Alignment:
Q  85 gtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    |||||| ||| |||||||||| ||||||| |||||||| |   |||||||||||||  ||||||||||||||||||| | ||||||||||    
T  12648838 gtaggttattataaggagaccattttaaaaacattatggaccactacctacggttgtggctgtcactaaaacttatcatggttttatttt 12648927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 12181398 - 12181251
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-at 124  Q
    |||||||||  |||||  ||| ||||||| ||||||||||||||||| ||        |||| ||||||| ||| ||||| ||||||| |||||| | |     
T  12181398 ctgtcattgtcaaatggatgtcgctgcatattttccacctttacctacggacaaaa--cgtatgtaattccaagtagaccattttaaaaacattacggac 12181301  T
Q  125 atctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
     | ||||| ||||||| |||||||||||| |||||| |||||||||||||    
T  12181300 ctatacctgcggttgcggctgtcactaaatcttatcattgttttatttta 12181251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 25339871 - 25339918
Alignment:
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  25339871 tctacctacagttgc-gctgtcactaaaacttatcattgttttatttta 25339918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 31410537 - 31410374
Alignment:
Q  31 attgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-atatcta 129  Q
    ||||| |||||| |||  |||| ||||||||||||||||||| ||       ||||||||||||||||||||| | |||| || |||||||| || ||||    
T  31410537 attgccaaatgattgtcactgcttgttttccacctttacctacggaaaaaaaccgtaggtaattctaaggagatcatttttaaaacattatggatctcta 31410438  T
Q  130 cctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaattt 193  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  31410437 cctacggttgcggctgtcactaaaacttatcattgttttattttgcccaagctccaaaaaattt 31410374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 27925790 - 27925700
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    |||||||||||||||||||||| |||||   |||||||| || |||||||| | |||| ||||||||||||||||||| ||||||||||||    
T  27925790 cgtaggtaattctaaggagaccattttatgaacattatggatctctacctatgattgcggctgtcactaaaacttatcattgttttatttt 27925700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 31708911 - 31708827
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattat-gatatctacctacggttgcagctgtcactaaaacttatcgttgtttt 168  Q
    |||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||  ||||||| | ||||||||| |||||||    
T  31708911 cgtaggtaattctaaggagaccattttaaaaacattatggatctctacctacggttgtggctgtcaat-aaacttatcattgtttt 31708827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 30546999 - 30547145
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-at 124  Q
    |||||||||| |||||  |||  |||||||||||||||||||||||| ||        |||| ||||||  ||||||||  ||||||| | |||||| |     
T  30546999 ctgtcattgcgaaatggttgtcactgcatgttttccacctttacctacggataaaa--cgtaagtaatttgaaggagactattttaaaaatattatggac 30547096  T
Q  125 atctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
     ||||||||||||||  ||||||||||||||||||| ||||||| ||||    
T  30547097 ctctacctacggttgtggctgtcactaaaacttatcattgttttgtttt 30547145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 34318573 - 34318482
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||| |||||||||| | ||||| |||||||| |  ||||||||| ||||  || ||||||| |||||||| |||||||||||||    
T  34318573 cgtaggtaattataaggagaccatgttaaaaacattatggacctctacctacagttgtggcagtcactataacttatcattgttttatttta 34318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 45262145 - 45262097
Alignment:
Q  122 gatatctacctacggttgcagctgtcactaaaacttatcgttgttttat 170  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  45262145 gatatctacctacggtcgcagttgtcactaaaatttatcattgttttat 45262097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 28840419 - 28840465
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttaccta 72  Q
    ||||||||||| |||   |||||||||||||||||||||||||||||    
T  28840419 ctgtcattgcagaatagatgttgctgcatgttttccacctttaccta 28840465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 29639947 - 29639782
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgata 125  Q
    |||||||||| ||||||| ||  ||||| |||||||||||||||||| ||       ||||||||||||||||| ||||| ||||||| |||||||||      
T  29639947 ctgtcattgccaaatgaccgtcactgcaagttttccacctttacctacggaaaaaa-ccgtaggtaattctaagtagaccattttaaaaacattatgacc 29639849  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatt 192  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  29639848 tctacctacagttgcggctgtcactaaaacttattgttgttttattttgcccaggctccaaaaaatt 29639782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 49868252 - 49868071
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgata 125  Q
    |||||||||| ||||| || |  ||||| |||||||||||||||||| ||       ||||||||||||||||||||||| ||||||| | |||||||      
T  49868252 ctgtcattgccaaatgtctatcactgcaagttttccacctttacctacggaaaaaa-ccgtaggtaattctaaggagaccattttaaaaatattatgacc 49868154  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactg 208  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||  ||| ||||||||||||| ||| |||| ||||||    
T  49868153 tctacctaccgttgcggctgtcactaaaacttattgttgttttattttgtccaggctccaaaaaattcctggctccgccactg 49868071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 6078646 - 6078537
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatgatatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagct 182  Q
    ||||||||||||||||||||||| ||||||| |||||||||  ||||||||| ||||| |||||||||| ||||||| ||||||||||||| |||| |||    
T  6078646 ccgtaggtaattctaaggagaccattttaaaaacattatgacctctacctacagttgcggctgtcactataacttattgttgttttatttttcccatgct 6078547  T
Q  183 ccaaaaaatt 192  Q
    ||||||||||    
T  6078546 ccaaaaaatt 6078537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 44196327 - 44196450
Alignment:
Q  86 taggtaattctaaggagaccgttttaaatacattatg-atatcta-cctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctc 183  Q
    ||||||||| |||||||||| ||||||| |||||||| |  |||| |||||| || | ||||| |||||||||||||||||||||||||| |||| ||||    
T  44196327 taggtaattttaaggagaccattttaaaaacattatggacctctaacctacgatttcggctgtgactaaaacttatcgttgttttatttttcccaggctc 44196426  T
Q  184 caaaaaatttctgactccaccact 207  Q
    ||||||||||||| |||| |||||    
T  44196427 caaaaaatttctggctccgccact 44196450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 48607429 - 48607345
Alignment:
Q  90 taattctaaggagaccgttttaaatacattatgatatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||||||||||||||| ||||||||||||||||   ||||||||||||||  | ||||||||||| ||||| |||||||||||||    
T  48607429 taattctaaggagaccattttaaatacattatggcttctacctacggttgtggttgtcactaaaatttatcattgttttatttta 48607345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 9636454 - 9636545
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||||| | ||||||||||||||||||||| |||||||| |  |||||||||||||||  |||| ||||||||||||| |||||||||||||    
T  9636454 cgtaggcagttctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattgttttatttta 9636545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 32380366 - 32380276
Alignment:
Q  85 gtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||||||||||||| ||||||| |||| ||| |  | ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  32380366 gtaggtaattctaaggagaccattttaaaaacataatggacctttacctacggttacggctgtcactaaaacttatcattgttttatttta 32380276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 30559857 - 30559733
Alignment:
Q  50 tgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattat-gatatctacctacggttgcagctgtca 148  Q
    |||||||||||||||||||||||| |       || |||||||||||||||||||| ||||||| ||||||| ||  ||||||||| ||| || ||||||    
T  30559857 tgcatgttttccacctttacctatcgacaaaa-ccataggtaattctaaggagaccattttaaaaacattatggacctctacctacagtttcaactgtca 30559759  T
Q  149 ctaaaacttatcgttgttttatttta 174  Q
    |||||| ||||| || ||||||||||    
T  30559758 ctaaaatttatcattattttatttta 30559733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 22785815 - 22785699
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagc 181  Q
    |||||||||||| |||| ||||  ||||||| | |||||| |  |||||||||||||||  ||||||||||||||||||||| ||||| ||| ||||  |    
T  22785815 ccgtaggtaattttaagaagacaattttaaaaatattatggacctctacctacggttgcgactgtcactaaaacttatcgtt-tttta-tttgcccagac 22785718  T
Q  182 tccaaaaaatttctgactc 200  Q
    || ||||||||||||||||    
T  22785717 tctaaaaaatttctgactc 22785699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 31637576 - 31637653
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttat 159  Q
    ||||||||||||||||||| ||| ||||||| | | |||| || |||| |||||||||||| ||||||||||||||||    
T  31637576 ccgtaggtaattctaaggataccattttaaaaataatatggatctctatctacggttgcagttgtcactaaaacttat 31637653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 14201475 - 14201411
Alignment:
Q  144 tgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactg 208  Q
    ||||||||||||||||| || |||||||||  ||| |||| | |||||||||| |||| ||||||    
T  14201475 tgtcactaaaacttatcattattttattttgtccaggctctataaaatttctggctccgccactg 14201411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 45586608 - 45586439
Alignment:
Q  39 atgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggt 137  Q
    ||||||||  |||||||||||||||||||||||| ||       ||||||||| || |||||||||| ||||||| |||||||| |  ||||| ||||||    
T  45586608 atgactgtcactgcatgttttccacctttacctacggaaaaaa-ccgtaggtacttataaggagaccattttaaaaacattatggacctctacatacggt 45586510  T
Q  138 tgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctgactccaccactg 208  Q
    |||  ||||||||||||||||||||||||||||||| ||||  |||||||||| ||||| |||||||||||    
T  45586509 tgcgactgtcactaaaacttatcgttgttttattttgcccagactccaaaaaaattctggctccaccactg 45586439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 47299916 - 47300085
Alignment:
Q  26 ctgtcattgcaaaatgactgttgctgcatgttttccacctttacctatggnnnnnnnccgtaggtaattctaaggagaccgttttaaatacattatgata 125  Q
    |||| ||||| ||||||||||  || ||| ||||||||||||||||| ||       || ||||||||||||| |||||| ||||||| |||| ||||      
T  47299916 ctgttattgccaaatgactgtcactacatattttccacctttacctacggaaaaaatcc-taggtaattctaaagagaccattttaaaaacatcatgacc 47300014  T
Q  126 tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaatttctg 196  Q
    |||||| |||||||  |||||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  47300015 tctaccaacggttgtggctgtcactaaaacttatcgttgttttattatgtccaggctccaaaaaatttctg 47300085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 21403041 - 21403159
Alignment:
Q  93 ttctaaggagaccgttttaaatacattatgata-tctacctacggttgcagctgtcactaaaacttatcgttgttttattttacccaagctccaaaaaat 191  Q
    ||||||||||||| ||||||| |||||||| |  |||||||| | |||| | ||||||||||||||||| |||||||||||| ||||  ||| | |||||    
T  21403041 ttctaaggagaccattttaaaaacattatggtcctctacctatgattgcggatgtcactaaaacttatcattgttttattttgcccagactctataaaat 21403140  T
Q  192 ttctgactccaccactgag 210  Q
    || ||||||| ||||||||    
T  21403141 ttatgactccgccactgag 21403159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 56039800 - 56039708
Alignment:
Q  83 ccgtaggtaattctaaggagaccgttttaaatacattat-gatatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||||||||||| ||  ||||||| | ||||  ||   |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  56039800 ccgtaggtaattctaaggatacaattttaaaaatattaaagaccgctacctacggttgcagctgtcagtaaaacttatcattgttttatttta 56039708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 10985223 - 10985137
Alignment:
Q  89 gtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||| ||||| | ||||| | |||||||| |  |||||||||||||||| ||||| |||||||||||| | |||||||||||    
T  10985223 gtaattctacggagagcattttataaacattatggacctctacctacggttgcaactgtctctaaaacttatcatcgttttatttta 10985137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 53693601 - 53693516
Alignment:
Q  84 cgtaggtaattctaaggagaccgtttt-aaatacatta-tgatatctacctacggttgcagctgtcactaaaacttatcgttgtttt 168  Q
    |||||||||||||||||||||| |||| ||||||||||  ||  |||||||||||||   ||||||||||||||||||| |||||||    
T  53693601 cgtaggtaattctaaggagaccattttaaaatacattacggacctctacctacggtt-tggctgtcactaaaacttatcattgtttt 53693516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 24105223 - 24105140
Alignment:
Q  89 gtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    ||||||||||||||||| ||||||   ||||||| |   ||||||| |||||  ||||||||||||||||||| |||||||||||||    
T  24105223 gtaattctaaggagaccattttaa---cattatggaccgctacctatggttgttgctgtcactaaaacttatcattgttttatttta 24105140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 17358824 - 17358903
Alignment:
Q  96 taaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||||||||| ||||||| |||||||| |  |||||||||| |||  | ||||||||||||||||  |||||||||||||    
T  17358824 taaggagaccattttaaaaacattatggacctctacctacgattgtggttgtcactaaaacttatgattgttttatttta 17358903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 4324953 - 4325042
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatgata-tctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    |||| ||||||||||| ||||| ||||||| |||||||||   | ||||||| ||||  | ||||||||||||||||| ||||||||||||    
T  4324953 cgtatgtaattctaagaagaccattttaaa-acattatgaacctttacctacagttgtggttgtcactaaaacttatcattgttttatttt 4325042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 17100 - 17191
Alignment:
Q  84 cgtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttta 174  Q
    |||| |||||| |||||| ||| |||||||||||||||| |  ||||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  17100 cgtatgtaattttaaggataccattttaaatacattatggacttctacctacggttgccgctatcactaaaacttatcattgttttatttta 17191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 435764 - 435676
Alignment:
Q  85 gtaggtaattctaaggagaccgttttaaatacattatg-atatctacctacggttgcagctgtcactaaaacttatcgttgttttatttt 173  Q
    |||||||||| |||||| ||| ||||||| |||||| | |  ||||||||||||||| | |||||||||||||||||   ||||||||||    
T  435764 gtaggtaattttaaggataccattttaaa-acattaaggacctctacctacggttgcggttgtcactaaaacttatcagagttttatttt 435676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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