View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15199_low_1 (Length: 365)
Name: NF15199_low_1
Description: NF15199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15199_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 44999564 - 44999716
Alignment:
| Q |
20 |
atagtctacatgacataaacacaaaataaaatggactgactgtcatcataaaaatacctttccatcaacaaattcacgccatcccaacatacggttttga |
119 |
Q |
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| T |
44999564 |
atagtctacatgacataaacacaaaataaaatggactgtctgtcat---aaaaatacctttccatcaacaaattcacgccatcccaacatacggttttga |
44999660 |
T |
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| Q |
120 |
ggatactttttggctgccacactacaatcatatcatatcataatagaaagggtcaattt |
178 |
Q |
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| T |
44999661 |
ggatactttttggctgccacactacaatcatatcatatc---atagaaagggtcaattt |
44999716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 44999751 - 44999862
Alignment:
| Q |
218 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999751 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
44999850 |
T |
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| Q |
318 |
tttaaaaccaac |
329 |
Q |
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|||||||||||| |
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| T |
44999851 |
tttaaaaccaac |
44999862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 38764223 - 38764175
Alignment:
| Q |
75 |
acctttccatcaacaaattcacgccatcccaacatacggttttgaggat |
123 |
Q |
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| T |
38764223 |
acctttccatcaacaattttacgccatccaagcatgcggttttgaggat |
38764175 |
T |
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