View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15199_low_2 (Length: 308)
Name: NF15199_low_2
Description: NF15199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15199_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 2905142 - 2905232
Alignment:
| Q |
141 |
tgtttgaatattccaactttgagaaaccatgcatatgtactttaatactttaaagaaatgcatcacacacattatcataattttaattgtt |
231 |
Q |
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| T |
2905142 |
tgtttgaatattccaactttgagaaaccatgcatatgtactttaatattttaaagaaatgcatcacacacattatcataattttaattgtt |
2905232 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 2905258 - 2905291
Alignment:
| Q |
228 |
tgttctatggaagaggattcggtagttgattgtg |
261 |
Q |
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| T |
2905258 |
tgttcgatggaagaggattcggtagttgattgtg |
2905291 |
T |
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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2904598 - 2904626
Alignment:
| Q |
1 |
tcaaagttattcacttctaatattttatt |
29 |
Q |
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| T |
2904598 |
tcaaagttattcacttctaatattttatt |
2904626 |
T |
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 45529062 - 45529134
Alignment:
| Q |
159 |
ttgagaaaccatgcatatgtactttaatactttaaagaaatgcatcacacacattatcataattttaattgtt |
231 |
Q |
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| T |
45529062 |
ttgagaaacaatgaatatgtacttgaatattctaaagaaatgcatcacacactttatcataattttaattgtt |
45529134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11083284 - 11083404
Alignment:
| Q |
1 |
tcaaagttattcacttctaatattttattttcaaatcaacctt-------------ttcaattgttcggctatccctaattaaatc--tgtgtgtaagat |
85 |
Q |
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| T |
11083284 |
tcaaagttattcacttttaatattttattttcaaatcaatcttaaattaaccaattttcagttgttcggctatccctaattaaatcggtgtgagtaagat |
11083383 |
T |
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| Q |
86 |
aaaatccatctgctatagaat |
106 |
Q |
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| T |
11083384 |
aaaatccatctgccatagaat |
11083404 |
T |
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