View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_101 (Length: 238)
Name: NF1519_high_101
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_101 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 235653 - 235873
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
117 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
235653 |
tcatttaatcaaaaggctcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
235752 |
T |
|
| Q |
118 |
gcttaagtgttctttgttatctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtctt |
217 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
235753 |
gcttaagtgttttttgttatctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttctaaataaaaattatgtctt |
235852 |
T |
|
| Q |
218 |
cttctccatctcaatatattt |
238 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
235853 |
cttctccatctcaatatattt |
235873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 236919 - 236697
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
117 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
236919 |
tcatttaatcaaaaggctcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
236820 |
T |
|
| Q |
118 |
gcttaagtgttctttgttatctc--tctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtc |
215 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
236819 |
gcttaagtgttctttgttatctctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttctaaataaaaattatgtc |
236720 |
T |
|
| Q |
216 |
ttcttctccatctcaatatattt |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
236719 |
ttcttctccatctcaatatattt |
236697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 12344959 - 12345174
Alignment:
| Q |
22 |
ttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccatttttagctt |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12344959 |
ttaatcaaaaagtttatatttatttacttaaaatcttacatg-tcattacttctctagatcttttcttgccatatttttgcatcacaccatttttagctt |
12345057 |
T |
|
| Q |
122 |
aagtgttctttgttatctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtcttcttc |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12345058 |
aagtgttctttgttatctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtcttcttc |
12345157 |
T |
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| Q |
222 |
tccatctcaatatattt |
238 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
12345158 |
tccatctcaatatattt |
12345174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 17605768 - 17605984
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
117 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17605768 |
tcatttaatcaaaagactcatatttatttacttaaaatcttacatggtcgttacttctctagatcttttcttaccatattttcgcatcacaccattttta |
17605867 |
T |
|
| Q |
118 |
gcttaagtgttctttgttatctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtctt |
217 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17605868 |
gcttaagtgttctttgttatctctcccctctttcttattattgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtctt |
17605967 |
T |
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| Q |
218 |
cttctccatctcaatat |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
17605968 |
cttctccatctcaatat |
17605984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 13477008 - 13476953
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattactt |
73 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||| || || ||||||||| |
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|
| T |
13477008 |
tcatttaatcaaaaggttcatatttatttaattgaaatctcacgtgatcattactt |
13476953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 53733722 - 53733502
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatatttttgcatcacaccattttta |
117 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
53733722 |
tcatttaatcaaaaggctcat--ttatttacttaaaatcttacatggtcattacttctctggatcttttctaaccatatttttgcatcacaccattttta |
53733625 |
T |
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| Q |
118 |
gcttaagtgttctttgttatctctctc--ctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53733624 |
gcttaagtgttctttgttatctctctctcctctttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtc |
53733525 |
T |
|
| Q |
216 |
ttcttctccatctcaatatattt |
238 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
53733524 |
ttcttctccatctcaatatattt |
53733502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 48561681 - 48561594
Alignment:
| Q |
149 |
ttcttattgttgtcggtcagatttcccctctctaccatcgatcaatgttccaaataaaaattatgtcttcttctccatctcaatatat |
236 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
48561681 |
ttcttattattgttgttcagatttcccctctctaccatcgatcaatgttccaaataaaaattaggtcttcttctcgaactcaatatat |
48561594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 48561962 - 48561907
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattactt |
73 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
48561962 |
tcatttaatcaaaaggctcatatttatttacttgaaatcttacatgatcatcactt |
48561907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4433839 - 4433784
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattactt |
73 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||| || || ||||||||| |
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| T |
4433839 |
tcatttaatcaaaaggttcatatttatttaattgaaatctcacgtgatcattactt |
4433784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4439198 - 4439143
Alignment:
| Q |
18 |
tcatttaatcaaaaagttcatatttatttacttaaaatcttacatggtcattactt |
73 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||| || || ||||||||| |
|
|
| T |
4439198 |
tcatttaatcaaaaggttcatatttatttaattgaaatctcacgtgatcattactt |
4439143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 15086604 - 15086663
Alignment:
| Q |
179 |
tctaccatcgatcaatgttccaaataaaaattatgtcttcttctccatctcaatatattt |
238 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15086604 |
tctaccatcggtcattgttccaaataaaaattatgtcttcttctccatctcaatacattt |
15086663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 15086541 - 15086602
Alignment:
| Q |
37 |
atatttatttacttaaaatcttacatggtcattacttctctagatcttttcttaccatattt |
98 |
Q |
| |
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|||||||||||||| |||||||| ||| ||||||||||||| |||||| |||||||||||| |
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| T |
15086541 |
atatttatttacttgaaatcttatatgatcattacttctctggatcttcgcttaccatattt |
15086602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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