View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_105 (Length: 238)
Name: NF1519_high_105
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_105 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43931656 - 43931893
Alignment:
| Q |
1 |
aatatagctctaaagtaaatcaggaggtatgcaatagcaataccttgtgagtaactgcatatgctgcttgttctggggtcatgttatcaaatggtgtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43931656 |
aatatagctctaaagtaaatcaggaggtatgcaatagcaataccttgtgagtaactgcatatgctgcttgttctggtgtcatgttatcaaatggtgtgag |
43931755 |
T |
|
| Q |
101 |
tcctgtaattagctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43931756 |
tcctgttattagctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaa |
43931855 |
T |
|
| Q |
201 |
gttccagtgaatcctttcgcactgccgcattgagattc |
238 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43931856 |
gttccagtgaatcctttcgcgctgccgcattgagattc |
43931893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 35131685 - 35131812
Alignment:
| Q |
111 |
agctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaagttccagtga |
210 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| ||||| || |||||| ||||||||||||||||||| || |||||||||||||| ||||| || | |
|
|
| T |
35131685 |
agctcccaaagaacgataccgaaactatacacatccacttttttagtatgatgtttttctctgatcatttcaggagccatccaacggtatgttccggtaa |
35131784 |
T |
|
| Q |
211 |
atcctttcgcactgccgcattgagattc |
238 |
Q |
| |
|
||||||| || ||||| ||||||||||| |
|
|
| T |
35131785 |
atccttttgcgctgccacattgagattc |
35131812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University