View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_109 (Length: 233)
Name: NF1519_high_109
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_109 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 28417415 - 28417618
Alignment:
| Q |
18 |
tgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaaaca |
117 |
Q |
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| T |
28417415 |
tgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaaaca |
28417514 |
T |
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| Q |
118 |
gctttacaatttcttgcgaatgagaaagcagaatcaatgttcgaagtaatattctgtgacgatcatgactggaaaaattggaaaaagataggtgattctg |
217 |
Q |
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| T |
28417515 |
gctttacaatttcttgctaatgagaaagcagaatcaatgttcgaagtaatattctgcgacgatcatgactggaaaaataggaaaaagataggtgattctg |
28417614 |
T |
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| Q |
218 |
tgct |
221 |
Q |
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|||| |
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| T |
28417615 |
tgct |
28417618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 28403860 - 28403999
Alignment:
| Q |
20 |
tacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaaacagc |
119 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| ||| ||||| ||| ||||| | |
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| T |
28403860 |
tacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatc |
28403959 |
T |
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| Q |
120 |
tttacaatttcttgcgaatgagaaagcagaatcaatgttc |
159 |
Q |
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| T |
28403960 |
tttgcaatttcttgttcatgagaaagcagaatcattgttc |
28403999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 28585936 - 28585797
Alignment:
| Q |
20 |
tacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaaacagc |
119 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| ||| ||||| ||| ||||| | |
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| T |
28585936 |
tacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatc |
28585837 |
T |
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| Q |
120 |
tttacaatttcttgcgaatgagaaagcagaatcaatgttc |
159 |
Q |
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| T |
28585836 |
tttgcaatttcttgttcatgagaaagcagaatcattgttc |
28585797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 28419871 - 28419962
Alignment:
| Q |
23 |
ttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaa |
114 |
Q |
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| T |
28419871 |
ttggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagtacatgcaattgtcacaaaa |
28419962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 28582319 - 28582228
Alignment:
| Q |
23 |
ttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagctgttgtcacaaaa |
114 |
Q |
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||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| | || ||||||||||| |
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| T |
28582319 |
ttggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagtacatgcaattgtcacaaaa |
28582228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 28404024 - 28404070
Alignment:
| Q |
175 |
gacgatcatgactggaaaaattggaaaaagataggtgattctgtgct |
221 |
Q |
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| T |
28404024 |
gacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
28404070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 28585760 - 28585726
Alignment:
| Q |
187 |
tggaaaaattggaaaaagataggtgattctgtgct |
221 |
Q |
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| T |
28585760 |
tggaaaaattggaaaaagataggtgattctgtgct |
28585726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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