View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_115 (Length: 214)
Name: NF1519_high_115
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_115 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32724964 - 32725182
Alignment:
| Q |
1 |
acctctcacgtttacacctgatcttctaaaactgtgctataaaaccagcatatata----gaagtaaaa-actaaactaaaatatacactttatgaaatt |
95 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |
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| T |
32724964 |
acctctcacgtttacacctgatcatctaaaactgtgctataaaaccagcatatatatatagaagtaaaaaactaaactaaaatatacattttatgaaatt |
32725063 |
T |
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| Q |
96 |
aatttcatgtgagaattttttattacaaaccaaaacgcacagacaatcagacatcactcacatttgtcaacaaaatttaagatccttcaacgatnnnnnn |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32725064 |
aatttcatgtgagaattttttattacaaaccaaaacgcacacacaatcagacatcagtcacatttgtcaacaaaatttaagatccttcaacgatcaaaaa |
32725163 |
T |
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| Q |
196 |
nctaccataagtggaactt |
214 |
Q |
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|||||||||||||||||| |
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| T |
32725164 |
actaccataagtggaactt |
32725182 |
T |
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