View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_12 (Length: 539)
Name: NF1519_high_12
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 74 - 522
Target Start/End: Original strand, 42206463 - 42206911
Alignment:
| Q |
74 |
cattatttcaaatcaaatgaacctttttaattttgcgtggttcaagtggtcggtggtttgagtctcttgagcatgtggtcatggttcaatctctaactca |
173 |
Q |
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| T |
42206463 |
cattatttcaaatcaaatgaacctttttaattttgcgtggttcaagtggtcggtggtttgagtctcttgagcatgtggtcatggttcaatctctaactca |
42206562 |
T |
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| Q |
174 |
tttgtattaaaattcaccatttgagaaagacaactcttaaatgtgcttcgaattttcgaatgaattagatgcagttgcacacatttctagaaaacagacc |
273 |
Q |
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| T |
42206563 |
tttgtattaaaattcaccatttgagaaagacaactcttaaatgtgcttcgagttttcgaatgaattagatgcagttgcacacatttctagaaaacagacc |
42206662 |
T |
|
| Q |
274 |
ttacaatgacaactccatttctagcaaacaaacatttcagtgacaactcaattatagcaacatgcataagctagtgatttagtatttactcgataacaat |
373 |
Q |
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| T |
42206663 |
ttacaatgacaactccatttctagcaaacaaacatttcagtgacaactcaattatagcaacatgcataagctagtgatttagtatttactcgataacaat |
42206762 |
T |
|
| Q |
374 |
ttgtttgattctgatcattctaattttaaacatgtatctaccaggtagtggttggtagttttatggcaggaaaccaacatgagcagaagccaagaaatca |
473 |
Q |
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| T |
42206763 |
ttgtttgattctgatcattctaattttaaacatgtatctaccaggtagtggttggtagttttatggcaggaaaccaacatgagcagaagccaagaaatca |
42206862 |
T |
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| Q |
474 |
gaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccatt |
522 |
Q |
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| T |
42206863 |
gaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccatt |
42206911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 42206399 - 42206427
Alignment:
| Q |
10 |
attattctatctgtaagggagaatatttg |
38 |
Q |
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| T |
42206399 |
attattctatctgtaagggagaatatttg |
42206427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 19085136 - 19085066
Alignment:
| Q |
451 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccat |
521 |
Q |
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| T |
19085136 |
catgagcagaagccaagaaatcagaaacacgatgtggtgtcaactgtgtcatctcctgctgttgttcccat |
19085066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 50991268 - 50991338
Alignment:
| Q |
451 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccat |
521 |
Q |
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| T |
50991268 |
catgagcagaagccaagaaatcagaaacacgatgtggtgtcaactgtgtcatctcatgttgttgttcccat |
50991338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 30908128 - 30908058
Alignment:
| Q |
451 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccat |
521 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30908128 |
catgagcataagccaagaaatcataaacacgatgtggtgtcaactgtgtcatcttctgctgttgttcccat |
30908058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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