View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_15 (Length: 505)
Name: NF1519_high_15
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_15 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 201 - 490
Target Start/End: Complemental strand, 32146641 - 32146356
Alignment:
| Q |
201 |
gtaggccaagaacaagaaagcatgaaaaaaggtgatacgaaaagtatacgggtccttggaacgaataggtgcataactttttnnnnnnncattgtgaaac |
300 |
Q |
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| T |
32146641 |
gtaggccaagaacaagaaaacatgaaaaa-ggtgatacgaaaagtatatgggtccttggaacgaataggtgcataactttttaaaaaaacattgtgaaac |
32146543 |
T |
|
| Q |
301 |
tgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttggctct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
32146542 |
tgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccaagcccgcctatggcga---gttggctct |
32146446 |
T |
|
| Q |
401 |
gaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataact |
490 |
Q |
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| T |
32146445 |
gaagtttgcacgccttaaatgagtatactcgcttatagcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataact |
32146356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 32146839 - 32146733
Alignment:
| Q |
28 |
tttgatcttgatgtctgcttgttcctaattcttcgtacctgagcatttgcttgaggccaatgaaggttccaagcatgaggaaattatataacactatttt |
127 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
32146839 |
tttgatcttgatgtctgcttgttcctaattcttcttacctgagcatttgcttgaggccaatgaagggtccaagcatggggaaattatataacactatttt |
32146740 |
T |
|
| Q |
128 |
ctaccta |
134 |
Q |
| |
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||||||| |
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| T |
32146739 |
ctaccta |
32146733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 463
Target Start/End: Complemental strand, 21333494 - 21333323
Alignment:
| Q |
290 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
388 |
Q |
| |
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|||||||||||||||||||| | | |||| || |||||| |||||||||| ||||||| | ||||||||||||||| || ||| || ||| | || || |
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| T |
21333494 |
cattgtgaaactgagtccatgatgatactacagaaccacaggacgagtcattacattttaaaaaagttgtgcaactcgcctccaagcttgccaaaggtga |
21333395 |
T |
|
| Q |
389 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgt |
463 |
Q |
| |
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| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
21333394 |
g---ttgactctgaagtttgcacgccttaagtgagtttactcgcttatggcgtgtttcctcaattttagaaatgt |
21333323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 290 - 463
Target Start/End: Complemental strand, 1610 - 1439
Alignment:
| Q |
290 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
388 |
Q |
| |
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|||||||||||| |||||| |||||||| || |||||| || |||||| ||||||| | ||||||||| ||||| || ||| || ||| |||| || |
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| T |
1610 |
cattgtgaaacttagtccacgacggtactacagaaccacaggccgagtcgttacattttaaaaaagttgtggaactcgcctccaagcttgccaatggtga |
1511 |
T |
|
| Q |
389 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgt |
463 |
Q |
| |
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| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
1510 |
g---ttgactctgaagtttgcacgccttaagtgagtgtactcgcttatggcgtgtttcctcagtttcagaaatgt |
1439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 32155777 - 32155688
Alignment:
| Q |
45 |
cttgttcctaattcttcgtacctgagcatttgcttgaggccaatgaaggttccaagcatgaggaaattatataacactattttctaccta |
134 |
Q |
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|
||||||||||||||||| ||||| |||| ||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
32155777 |
cttgttcctaattcttcctacctaagcaattgctcaaggccaatgaagggtccaagcatggggaaattttataacactattttctaccta |
32155688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 296 - 462
Target Start/End: Complemental strand, 15559799 - 15559636
Alignment:
| Q |
296 |
gaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttg |
395 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||| ||||||| ||| ||||||| | |||||||||| |||| ||||| || |||| ||||| || ||| |
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| T |
15559799 |
gaaactgagtccatgacggcactacaaaaccacaggacgaggcaatacattttgaaaaagttgtgcgactcgccccaagctcgccaatggctag---ttg |
15559703 |
T |
|
| Q |
396 |
gctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatg |
462 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
15559702 |
gctctggagtttgcacgccttaagtgagtttactcgcttacggcgtgttccatcagtttcagaaatg |
15559636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 12058998 - 12058833
Alignment:
| Q |
290 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
389 |
Q |
| |
|
||||||||||||||| ||| |||||||| | |||||| ||||||||||| |||| || | ||||||||| |||| ||||| || | || |||||||| |
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| T |
12058998 |
cattgtgaaactgagctcatgacggtactttagaaccacaggacgagtcaatacatcttgaaaaagttgtgtgactcgccccaagctccccaatggcgag |
12058899 |
T |
|
| Q |
390 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcaga |
458 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
12058898 |
---ttggctctggagtttgcacgccttaagtgagtttactcgcttatggcgtgttgcatcagtttcaga |
12058833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 448
Target Start/End: Original strand, 23457127 - 23457332
Alignment:
| Q |
243 |
agtatacgggtccttggaacgaataggtgcataactttttnnnnnnncattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaaca |
342 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| || | |||||||||||||||||| | | | |||||| |||||||||| | |
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|
| T |
23457127 |
agtatatgggtccttggaacgaataggtgcatagtcttttaaaagaatatcctaaaactgagtccataacggcgccgtagaaccacaggacgagtcacta |
23457226 |
T |
|
| Q |
343 |
catttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttggctctg----aagtttgcatgccttaagtgagtttactcgcttatgg |
438 |
Q |
| |
|
|||||| | |||||||| |||||| ||||| || |||| ||| ||| |||||||||| ||||||||| | |||||||||| || |||||||| |
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| T |
23457227 |
cattttga-aaagttgtacaactcgccccaagctcgccaatgacga---gttggctctgaattaagtttgcacgtcttaagtgagcttgctcgcttacaa |
23457322 |
T |
|
| Q |
439 |
cgtgtttcat |
448 |
Q |
| |
|
|||||||||| |
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|
| T |
23457323 |
cgtgtttcat |
23457332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 461
Target Start/End: Original strand, 19078 - 19245
Alignment:
| Q |
290 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
389 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||| | ||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||||| |
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| T |
19078 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacaca-ttttaggaagttgtgcaactcgccccaaactcgctcatggcga- |
19175 |
T |
|
| Q |
390 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaat |
461 |
Q |
| |
|
|||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| |
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|
| T |
19176 |
--gttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaat |
19245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 461
Target Start/End: Complemental strand, 14820634 - 14820467
Alignment:
| Q |
290 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
389 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||| | ||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||||| |
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|
| T |
14820634 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacaca-ttttaggaagttgtgcaactcgccccaaactcgctcatggcga- |
14820537 |
T |
|
| Q |
390 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaat |
461 |
Q |
| |
|
|||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| |
|
|
| T |
14820536 |
--gttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaat |
14820467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 7511 - 7477
Alignment:
| Q |
247 |
tacgggtccttggaacgaataggtgcataactttt |
281 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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|
| T |
7511 |
tacgggttcttggaacgaataggtgcataactttt |
7477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 15593289 - 15593219
Alignment:
| Q |
392 |
gttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatg |
462 |
Q |
| |
|
||||||| || ||||| || || ||||| ||||||||| |||||||||||||||| | |||| |||||||| |
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|
| T |
15593289 |
gttggctttggagtttacacgctttaagcgagtttacttgcttatggcgtgtttctttagttccagaaatg |
15593219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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