View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_16 (Length: 501)
Name: NF1519_high_16
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 271 - 485
Target Start/End: Original strand, 4240433 - 4240647
Alignment:
| Q |
271 |
agggatcatatatgatcttacctgatgatgatgatgatcatagttttctccaaagtctccaagtaagttaaagaaggtaggagtgtcctgatcaacagga |
370 |
Q |
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| T |
4240433 |
agggatcatatatgatcttacctgatgatgatgatgatcatagttttctccaaagtctccaagtaagttaaagaaggtaggagtgtcctgattaacagga |
4240532 |
T |
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| Q |
371 |
gaaatattgaagaattggttttgaccttgtagtaaggaattaggacctggtggattcagagaaacaggagtcatggatggatggatcgatgagttataat |
470 |
Q |
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| T |
4240533 |
gaaatattgaagaattggttttgaccttgtagtaaggaattaggacctggtggattcagagaaacaggagtcatggatggatggatcgatgagttataat |
4240632 |
T |
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| Q |
471 |
aacacacagagaaag |
485 |
Q |
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| T |
4240633 |
aacacacagagaaag |
4240647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 4240307 - 4240397
Alignment:
| Q |
148 |
ctttctttcattcaaacacacagtttagtataagtgtcatgataaaaagagaaaaaagcaaagtatggagaatatattggtaataagctat |
238 |
Q |
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| T |
4240307 |
ctttctttcattcaaacacacagtttagtataagtgtcatgataaaaagagaaaaaagcaaagtatggagaatatattggtaataagctat |
4240397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 4240083 - 4240135
Alignment:
| Q |
85 |
aacatggattatagcttgctctgtcagtgtctgttttggtgttttctggtata |
137 |
Q |
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| T |
4240083 |
aacatggattatagcttgctctgtcagtgtctgttttggtgttttctggtata |
4240135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 299 - 480
Target Start/End: Original strand, 19939547 - 19939728
Alignment:
| Q |
299 |
tgatgatgatcatagttttctccaaagtctccaagtaagttaaagaaggtaggagtgtcctgatcaacaggagaaatattgaagaattggttttgacctt |
398 |
Q |
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| T |
19939547 |
tgatgatgatcatgattttctccaaagtctccaagtaatttaaagaatgtaggagtgtcctgattaacaggagaaatattgaagaatttgttttgacctt |
19939646 |
T |
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| Q |
399 |
gtagtaaggaattaggacctggtggattcagagaaacaggagtcatggatggatggatcgatgagttataataacacacaga |
480 |
Q |
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| T |
19939647 |
gtacttaggaattaggacctggtggattcagagaaacaagagtcatggatggatggatcgatgagttataataacacacaga |
19939728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 299 - 485
Target Start/End: Original strand, 19923663 - 19923853
Alignment:
| Q |
299 |
tgatgatgatcatagttttctccaaagtctccaagtaagttaaagaaggtaggagtgtcctgatcaacaggagaaatattgaagaattggttttgacctt |
398 |
Q |
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| T |
19923663 |
tgatgatgatcatgattttctccaaagtctccaagtaatttaaagaaggtaggagtgtccttattaacaggagaaatattgaagaattggttttgacttt |
19923762 |
T |
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| Q |
399 |
gtagtaaggaattaggacctggtggattcagagaaacaggagtcatggatggatg----gatcgatgagttataataacacacagagaaag |
485 |
Q |
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| T |
19923763 |
gtagtaaagaattaagatctggtggatttagagaaacagaagacatggatggatggatcgatcgatgagttataataacacacagagaaag |
19923853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 19923489 - 19923531
Alignment:
| Q |
153 |
tttcattcaaacacacagtttagtataagtgtcatgataaaaa |
195 |
Q |
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| T |
19923489 |
tttcattcaaacaaacagtttagtaaaagtgtcatcataaaaa |
19923531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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