View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_17 (Length: 477)
Name: NF1519_high_17
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 468
Target Start/End: Complemental strand, 51735392 - 51734935
Alignment:
| Q |
11 |
ataggcatttaatcaactttttaaccagacatgnnnnnnnnn-tatggaagcagatattgtagctcaaacgaaaaggatacatctgatgtgtattatatt |
109 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735392 |
ataggcatttaatcaactttttaaccagacatgaaaaaaaatatgtggaagcagatattgtagctcaaacgaaaaggatacatctgatgtgtattatatt |
51735293 |
T |
|
| Q |
110 |
tcttcatttttcaaaaaatatcaattacaaagacaggagaattccaaacagcatagtagactcggtttacgtctgctcaactatataacagaaatagata |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735292 |
tcttcatttttcgaaaaatatcaattacaaagacaggagaattccaaacagcatggtagactcggtttacgtctgctcaactatataacagaaatagata |
51735193 |
T |
|
| Q |
210 |
gtgattaccaacttttgtatacctacttggtcnnnnnnnnttagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttcattta |
309 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735192 |
gtgattaccaacttttgtattcctacttggtaaaaaaaaattagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttcattta |
51735093 |
T |
|
| Q |
310 |
tatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgatttacatggattatgnnnnn |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735092 |
tatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgatttacatggattat-ttttt |
51734994 |
T |
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| Q |
410 |
nnnnnnaaacnnnnnnncttattttaactcaacaatctgaagaagatcaagttaagagt |
468 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51734993 |
tttttcaaacaaaaaaacttattttaactcaacaatctgaagaagatcaagttaagagt |
51734935 |
T |
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