View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_20 (Length: 442)
Name: NF1519_high_20
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 203 - 432
Target Start/End: Complemental strand, 4809496 - 4809267
Alignment:
| Q |
203 |
tccataaagttttaatgtcaacaattattgttttgaagataaagtattatttatggatttattaacatgtctcttttagcacaagttacagtcacctttt |
302 |
Q |
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| T |
4809496 |
tccataaagttttaatgtcaacaattattgttttgaagataatgtattatttatggatttattaacatgtctcttttggcacaagttacagtcacctttt |
4809397 |
T |
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| Q |
303 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcttgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
402 |
Q |
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| T |
4809396 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcatgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
4809297 |
T |
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| Q |
403 |
catttccttttatcagtagacacccctttg |
432 |
Q |
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| T |
4809296 |
catttccttttatcagtagacacccctttg |
4809267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 4831811 - 4831722
Alignment:
| Q |
115 |
tacatgaaaaaagaaaagtctgcactaactttgtttatattcacatatgtctagtgtctaatctccaatcttattgatacaatattactc |
204 |
Q |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtttatattcacatatgtctagtgtctaatcttcaatcttatcgatacaatattactc |
4831722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 4834184 - 4834092
Alignment:
| Q |
58 |
ttattttctttatattaacat-ttacaatcagagattggtgattgtttgggaaatttatacatgaaaaaagaaaagtctgcactaactttgtt |
149 |
Q |
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| T |
4834184 |
ttattttctatatattaacatgttacaattagagattggtgattgtttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgtt |
4834092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 4809528 - 4809490
Alignment:
| Q |
19 |
ctgtcattgttgaattccttgcccaattaacttgcataa |
57 |
Q |
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| T |
4809528 |
ctgtcattgttgaattccttgcccaattaacttccataa |
4809490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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