View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_27 (Length: 412)
Name: NF1519_high_27
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 31722050 - 31721654
Alignment:
| Q |
9 |
gaagaaaatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
108 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31722050 |
gaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
31721951 |
T |
|
| Q |
109 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31721950 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
31721851 |
T |
|
| Q |
209 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31721850 |
ttccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcaca |
31721751 |
T |
|
| Q |
309 |
tgaactatattccatgtagtaattgctt---------ctttctttgaatttttgtaagagtttccacgtgattctcatttccccattagagggtgtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31721750 |
tgaactatattccatgtagtaattgcttgtttctttgttttctttgaagttttgtaagagtttccacgtgattctcatttccccattagagggtgtt |
31721654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 31711344 - 31711024
Alignment:
| Q |
9 |
gaagaaaatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
108 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31711344 |
gaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
31711245 |
T |
|
| Q |
109 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
31711244 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacgga |
31711145 |
T |
|
| Q |
209 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31711144 |
ttccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggtggcttcaca |
31711045 |
T |
|
| Q |
309 |
tgaactatattccatgtagta |
329 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31711044 |
tgaactatattccatgtagta |
31711024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 31719444 - 31719134
Alignment:
| Q |
10 |
aagaaaatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
109 |
Q |
| |
|
||||| |||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719444 |
aagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
31719345 |
T |
|
| Q |
110 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719344 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
31719245 |
T |
|
| Q |
210 |
tccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacat |
309 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31719244 |
tccaaaggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggtggcttcacat |
31719151 |
T |
|
| Q |
310 |
gaactatattccatgta |
326 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
31719150 |
gaactatattctatgta |
31719134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 31716499 - 31716214
Alignment:
| Q |
9 |
gaagaaaatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
31716499 |
gaagaagatgcagatcatacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat-------------g |
31716413 |
T |
|
| Q |
109 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
208 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||| |
|
|
| T |
31716412 |
gtgacaaaaatcaagaatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaagga |
31716313 |
T |
|
| Q |
209 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcaca |
308 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || |||||||||||||| |
|
|
| T |
31716312 |
ttccaaaggctcgtcaagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaaaactttggttgcttcaca |
31716219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 31730169 - 31730252
Alignment:
| Q |
243 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccatgta |
326 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| | |||||||||| |
|
|
| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggccttggttgcttctcatgaattgaattccatgta |
31730252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
34 |
agaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
133 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
|
|
| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
|
| Q |
134 |
tgaactttatgtt |
146 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University