View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_28 (Length: 408)
Name: NF1519_high_28
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 35224478 - 35224081
Alignment:
| Q |
10 |
attattcttaaaactctttaaatgtttccctgcatatcaaataaggaaaatggaagcaaaaacatgttactcagtgtgttgcaaactaagcttaattatt |
109 |
Q |
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| T |
35224478 |
attattcttaaaactctttaaatgtttccctgcatatcaaataaggaaaatggaagcaaaaacatgttactcagtgtgttgcaaactaagcttaattatt |
35224379 |
T |
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| Q |
110 |
taaaaggctttgttttcttttgcttaaaagactagtaaagcaaggttgtatactcttctccataa--------------cacattggattaaagatagcc |
195 |
Q |
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| T |
35224378 |
taaaaggctttgttttcttttgcttaaaagactagtaaagcaaggttgtatactcttctccataagtgttaaagagtcccacattggattaaagatagcc |
35224279 |
T |
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| Q |
196 |
caaacatgtatctaaataacttttccaaaaacatctattaagaacttttttcgtaaatgaagaattgttagtttcttttgttt-nnnnnnnntctcttaa |
294 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
35224278 |
caaacatgtatctaaataacttttccaaaaacacctattaagaactttttccgtaaatgaagaattgttagtttcttttgtttaaaaaaaaatctcttaa |
35224179 |
T |
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| Q |
295 |
gtcaggaactaatccaatataagccttagtttacatgttttctgatttggcttcctaaggttc-aggtcccattaagggctgccccaaagtcagcctt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35224178 |
gtcaggaactaatccaatataagccttagtttacatgttttctgatttggcttcctaaggttcaaggtcccattaagggctgccccaaagtcagcctt |
35224081 |
T |
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