View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_30 (Length: 398)

Name: NF1519_high_30
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_30
NF1519_high_30
[»] chr1 (5 HSPs)
chr1 (91-214)||(34589936-34590059)
chr1 (1-92)||(34589799-34589890)
chr1 (271-338)||(34590700-34590767)
chr1 (338-374)||(34590788-34590824)
chr1 (209-242)||(34590668-34590701)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 34589936 - 34590059
Alignment:
Q  91 ttgacccatgtaaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga 190  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34589936 ttgacccatataaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga 34590035  T
Q  191 tgacaattgacgagttacaaagta 214  Q
    ||||||||||||||||||||||||    
T  34590036 tgacaattgacgagttacaaagta 34590059  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34589799 - 34589890
Alignment:
Q  1 tctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaatactt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34589799 tctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaatactt 34589890  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 34590700 - 34590767
Alignment:
Q  271 gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagcaatcatagtgaaaatga 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34590700 gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagcaatcatagtgaaaatga 34590767  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 34590788 - 34590824
Alignment:
Q  338 atgaaaggcaacctgaaattgatgagcaaaaaatgtt 374  Q
    |||||||||||||||||||||||||||||||||||||    
T  34590788 atgaaaggcaacctgaaattgatgagcaaaaaatgtt 34590824  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 34590668 - 34590701
Alignment:
Q  209 aaagtatacaagttgaataatcaaaacaatgggt 242  Q
    |||| |||||||||||||||||||||||||||||    
T  34590668 aaagcatacaagttgaataatcaaaacaatgggt 34590701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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