View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_32 (Length: 395)
Name: NF1519_high_32
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 6020007 - 6019649
Alignment:
| Q |
1 |
gatcggaactgactacatttgtaaaagacaggaaatatgatggcatatattaagcaaaaggtggtacttggtagaatgtcatctataagatagtttggtc |
100 |
Q |
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| T |
6020007 |
gatcggaactgactacatttgtaaaagacaggaaatatgatggcatatattaagcaaaaggtggtacttggtagaatgtcatctataagatagtttggtc |
6019908 |
T |
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| Q |
101 |
agacgagtaaaagaccaataataataattgatcaaatgcgaagtggcttgcaatgtcagatgctgaatatgattaagaaaaacagcaaaactattaaaaa |
200 |
Q |
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| T |
6019907 |
agacgagtaaaagaccaataataataattgatcaaatgcgaagtggcttgcaatgtcagatgctgaatatgattaagaaaaacagcaaaactattaaaaa |
6019808 |
T |
|
| Q |
201 |
tgatttggatctaaatggttgctcctaagtcccaagtcttggttttgatagacataatggcatcatttaatctgtgtaggagtgaccttactcagagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6019807 |
tgatttggatctaaatggttgctcctaagtcccaagtcttggttttgatagacataatggcatcatttaatctgtgtaggagtgaccttactcagagaaa |
6019708 |
T |
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| Q |
301 |
tgactcttgaagtcttgttgcagtagggtataaaataagtatatgtgactatatgaagg |
359 |
Q |
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| T |
6019707 |
tgactcttgaagtcttgttgcagtagggtataaaataagtatatgtgactatatgaagg |
6019649 |
T |
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