View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_35 (Length: 388)

Name: NF1519_high_35
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_35
NF1519_high_35
[»] chr8 (11 HSPs)
chr8 (22-385)||(13231662-13232026)
chr8 (198-274)||(2623238-2623314)
chr8 (205-263)||(41456063-41456121)
chr8 (206-271)||(13231481-13231546)
chr8 (183-260)||(278966-279043)
chr8 (183-260)||(636809-636886)
chr8 (183-260)||(822612-822689)
chr8 (178-262)||(279733-279816)
chr8 (178-262)||(636036-636119)
chr8 (178-262)||(821839-821922)
chr8 (201-274)||(33231128-33231201)
[»] chr4 (10 HSPs)
chr4 (183-271)||(12007480-12007568)
chr4 (213-305)||(12007921-12008009)
chr4 (198-262)||(32641203-32641267)
chr4 (185-264)||(26305567-26305646)
chr4 (183-262)||(50072000-50072079)
chr4 (183-274)||(2486925-2487017)
chr4 (208-263)||(5474862-5474917)
chr4 (185-236)||(26439911-26439962)
chr4 (198-242)||(39484384-39484428)
chr4 (183-243)||(50071298-50071358)
[»] chr1 (11 HSPs)
chr1 (183-287)||(44634036-44634140)
chr1 (48-123)||(27575693-27575769)
chr1 (183-274)||(27573559-27573650)
chr1 (183-274)||(27702581-27702672)
chr1 (213-284)||(28652471-28652541)
chr1 (183-272)||(25476058-25476147)
chr1 (123-181)||(27575174-27575230)
chr1 (213-264)||(28651715-28651766)
chr1 (22-102)||(44633497-44633579)
chr1 (122-167)||(44633746-44633791)
chr1 (234-283)||(27576898-27576947)
[»] chr5 (8 HSPs)
chr5 (183-262)||(17115735-17115814)
chr5 (183-287)||(24153202-24153306)
chr5 (183-287)||(24153945-24154049)
chr5 (216-273)||(29108110-29108166)
chr5 (183-245)||(35145617-35145679)
chr5 (184-243)||(17116461-17116520)
chr5 (183-238)||(29108704-29108759)
chr5 (183-287)||(31079722-31079826)
[»] chr2 (7 HSPs)
chr2 (183-287)||(35063617-35063721)
chr2 (198-276)||(35064406-35064484)
chr2 (216-262)||(41714118-41714164)
chr2 (203-272)||(40056338-40056407)
chr2 (188-287)||(38356847-38356946)
chr2 (198-264)||(27060341-27060407)
chr2 (216-272)||(29453651-29453707)
[»] chr3 (2 HSPs)
chr3 (198-284)||(45005511-45005597)
chr3 (183-272)||(45146665-45146754)
[»] scaffold0301 (2 HSPs)
scaffold0301 (186-238)||(7857-7909)
scaffold0301 (43-78)||(8144-8179)
[»] chr7 (3 HSPs)
chr7 (198-251)||(21516209-21516262)
chr7 (198-251)||(21516432-21516485)
chr7 (198-251)||(21516655-21516708)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 385
Target Start/End: Original strand, 13231662 - 13232026
Alignment:
Q  22 tggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattgaaaaaactaaaagcatcgtaaacacaatcaaaca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13231662 tggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattgataaaactaaaagcatcgtaaacacaatcaaaca 13231761  T
Q  122 cattgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtacatgatgacaatgggaggtgtttgtgcatttgatgagaactaaagggaggt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13231762 cattgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtaaatgatgacaatgggaggtgtttgtgcatttgatgagaactaaagggaggt 13231861  T
Q  222 tagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgactgtaattttcccttaaaataaaatgaaaccta 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13231862 tagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgactgtaattttcccttaaaataaaatgaaaccta 13231961  T
Q  322 acataaatgtaaggacaaaatacagaattaggccaaaa-tgtatttcgttaattttcttcgacat 385  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||    
T  13231962 acataaatgtaaggacaaaatacagaattaggccaaaattgtgtttcgttaattttttccgacat 13232026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 2623238 - 2623314
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 274  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||    
T  2623238 atttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacctta 2623314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 41456063 - 41456121
Alignment:
Q  205 gagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 263  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  41456063 gagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcatttt 41456121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 13231546 - 13231481
Alignment:
Q  206 agaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 271  Q
    ||||||||||||||||||||| |||||||||||||| ||  | ||| |||||||||||||||||||    
T  13231546 agaactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcattttagtaaacc 13231481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 279043 - 278966
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 260  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  279043 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 278966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 636809 - 636886
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 260  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  636809 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 636886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 822612 - 822689
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 260  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  822612 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 822689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 279733 - 279816
Alignment:
Q  178 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  279733 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 279816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 636119 - 636036
Alignment:
Q  178 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  636119 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 821922 - 821839
Alignment:
Q  178 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  821922 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 33231201 - 33231128
Alignment:
Q  201 tgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 274  Q
    |||||| |||||||||||||||  || | |||||||||||||||| | ||  |||||||||||| || ||||||    
T  33231201 tgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacctta 33231128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 12007568 - 12007480
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 271  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||    
T  12007568 gggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaacc 12007480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 12007921 - 12008009
Alignment:
Q  213 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgactgtaattttcccttaa 305  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||| |    ||||||||||||||||    
T  12007921 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtg----tgtaattttcccttaa 12008009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 32641267 - 32641203
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32641267 attttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcattt 32641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 26305646 - 26305567
Alignment:
Q  185 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 264  Q
    ||||||||||| |||||||| | || | | ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  26305646 gaggtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcatttta 26305567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 50072000 - 50072079
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| || ||| ||||| ||||||||||    
T  50072000 gggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtcattt 50072079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 2486925 - 2487017
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaact-aaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 274  Q
    |||||||||||||   |||||||||| || |||||||  ||||||| |||||||||| |||| | |||||||||||| ||||| || ||||||    
T  2486925 gggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagacctta 2487017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 5474862 - 5474917
Alignment:
Q  208 aactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 263  Q
    |||| |||||||||| |||||||||||||||| ||||| | ||| |||||||||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcatttt 5474917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 26439962 - 26439911
Alignment:
Q  185 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaa 236  Q
    |||||||||||| |||||||||||| | ||||||| ||| ||||||||||||    
T  26439962 gaggtgtttgtgtatttgatgagaatttaagggagattattgtaagttttaa 26439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 39484428 - 39484384
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattag 242  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  39484428 atttcatgagaacttgagggaggtaagtgtaagttttaaaattag 39484384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 50071358 - 50071298
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 243  Q
    |||| ||||||||| ||||||||| | || ||||||||||||||| | |||||||| ||||    
T  50071358 gggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactaga 50071298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 44634036 - 44634140
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 282  Q
    |||||||| ||||  |||||||||||||| |||||||||| || |  ||||||||| |||||| ||||||| |||||||||||||||| ||| | |||||    
T  44634036 gggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggaggt 44634135  T
Q  283 gagtg 287  Q
    |||||    
T  44634136 gagtg 44634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 27575769 - 27575693
Alignment:
Q  48 ataaccatttcattgttgtcatcaaccaaatccatcattga-aaaaactaaaagcatcgtaaacacaatcaaacaca 123  Q
    |||| ||| |||||||||||||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||||    
T  27575769 ataatcatctcattgttgtcatcaaccgaatctatcatggataaaaactaaaagcatcgtaaacgcaatcaaacaca 27575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 27573650 - 27573559
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 274  Q
    |||| ||| |||| ||||||||||||| | |||||||||| ||||||||||||||| |||  | ||||||| | ||||||||||||||||||    
T  27573650 gggaagtgcttgtacatttgatgagaatttaagggaggttggtgtaagttttaaaactagtcggggtgtcaatatcattttagtaaacctta 27573559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 27702672 - 27702581
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 274  Q
    |||||||||||||  ||||||| | |||| |||||| |||||||||| ||||||||||| ||  | |||||||||||||||| |||||||||    
T  27702672 gggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaacctta 27702581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 28652471 - 28652541
Alignment:
Q  213 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 284  Q
    |||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||| ||| |||||||    
T  28652471 aagggaggttagtgtaagttttaaaaatagagg-ggtgtcaatgttattttagtaaacctcaagggaggtga 28652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 25476058 - 25476147
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 272  Q
    |||||||||||||  |||| || | ||||  ||||||||| ||||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  25476058 gggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacct 25476147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 27575230 - 27575174
Alignment:
Q  123 attgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtacatgatgacaa 181  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  27575230 attgcaaatcaaagttatgcataaaagtaactca--acaattcaagtaaatgatgacaa 27575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 28651766 - 28651715
Alignment:
Q  213 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 264  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  28651766 aagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcatttta 28651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 44633497 - 44633579
Alignment:
Q  22 tggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattg--aaaaaactaaaagca 102  Q
    ||||||||| |||| ||||  |||| |||||||||||||||| || ||||||||||| ||||||||  |||||||||||||||    
T  44633497 tggcaaaagcaccgtaaacgaagttgataaccatttcattgtggtaatcaaccaaattcatcattgataaaaaactaaaagca 44633579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 44633746 - 44633791
Alignment:
Q  122 cattgcaaatcaaatttatgcataaaagtaactcaacacaattcaa 167  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  44633746 cattgcaaatcaaagttatgcacaaaagtaactcaacacaattcaa 44633791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 27576898 - 27576947
Alignment:
Q  234 taaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtg 283  Q
    ||||| |||||| | |||||||||||||||||||||||||| | ||||||    
T  27576898 taaaactagaggggatgtcagtgtcattttagtaaaccttaggggaggtg 27576947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 17115814 - 17115735
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| |||||  ||||| ||||||||||    
T  17115814 gggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcattt 17115735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 24153306 - 24153202
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 282  Q
    ||||||||||||| ||||| || |||||| ||||||||||||||| | |||||||| |||||  |||||| || |||||||| || |||| |||  ||||    
T  24153306 gggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaaggt 24153207  T
Q  283 gagtg 287  Q
    |||||    
T  24153206 gagtg 24153202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 24153945 - 24154049
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 282  Q
    |||||||||||||  |||||||   |||| ||||||||||| ||| |||||||||| |||||| ||| | | |||||||||| ||||||||| | |||||    
T  24153945 gggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggt 24154044  T
Q  283 gagtg 287  Q
    |||||    
T  24154045 gagtg 24154049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 29108166 - 29108110
Alignment:
Q  216 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctt 273  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  29108166 ggaggttagtgtaagttttaaaactagagg-ggtgttagtgtcatttttgtaaacctt 29108110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 35145679 - 35145617
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagg 245  Q
    |||| ||||||||  |||| |||||||||  ||||||||||||||||||||||||| ||||||    
T  35145679 gggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagg 35145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 17116461 - 17116520
Alignment:
Q  184 ggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 243  Q
    ||||||||||||| ||||||||| | || || |||||||||||| |||||||||| ||||    
T  17116461 ggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 17116520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 29108704 - 29108759
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 238  Q
    |||||||||||||  ||||| | | |||| ||||||||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaa 29108759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 31079722 - 31079826
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 282  Q
    |||| ||||||||  ||||| ||| |||  ||||||||||| |||   |||||||| ||||| |||||| |||| ||||||| ||||||||| | |||||    
T  31079722 gggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggaggt 31079821  T
Q  283 gagtg 287  Q
     ||||    
T  31079822 aagtg 31079826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 35063721 - 35063617
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 282  Q
    ||||| |||||||  |||| || | |||| ||||||||||  |||||||||||||| ||||||  ||||||||| ||||||| ||||||| ||| |||||    
T  35063721 gggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggt 35063622  T
Q  283 gagtg 287  Q
    |||||    
T  35063621 gagtg 35063617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 35064406 - 35064484
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaag 276  Q
    |||||||||||| | |||||| |||||||| |||||||||| |||||| | ||| |||||||||||| ||||| |||||    
T  35064406 atttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaactttaag 35064484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 41714164 - 41714118
Alignment:
Q  216 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 262  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||    
T  41714164 ggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt 41714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 40056407 - 40056338
Alignment:
Q  203 atgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 272  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| | ||||| |||||||||||  |||||||    
T  40056407 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacct 40056338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 38356946 - 38356847
Alignment:
Q  188 gtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 287  Q
    ||||||||  ||||||| | |||| ||||||||||| |||| ||||||||| |||||| |||||  ||||||| ||| || |||| | | ||||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 27060407 - 27060341
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 264  Q
    ||||||||||| || |||||| |||||| | |||||||||| |||||||| ||| ||||||| ||||    
T  27060407 atttgatgagagcttaagggatgttagtattagttttaaaactagaggagatgttagtgtcaattta 27060341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 29453651 - 29453707
Alignment:
Q  216 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 272  Q
    |||||||| ||||||||| |||| |||||||||||| ||||| |||||  |||||||    
T  29453651 ggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacct 29453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 45005511 - 45005597
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 284  Q
    |||||||||||||| ||||||| | ||||| |||||||||| ||| |||  ||| |||||||||||| ||||||| ||| |||||||    
T  45005511 atttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 45146665 - 45146754
Alignment:
Q  183 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 272  Q
    |||||||||||||  |||| || |||||  ||||||||||||||| ||||||||||||||| | | |||  ||||||||||| |||||||    
T  45146665 gggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacct 45146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  186 aggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 238  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||    
T  7909 aggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaa 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 8179 - 8144
Alignment:
Q  43 agttaataaccatttcattgttgtcatcaaccaaat 78  Q
    |||| |||||||||||||||||||||||||||||||    
T  8179 agttgataaccatttcattgttgtcatcaaccaaat 8144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21516262 - 21516209
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 251  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516262 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21516485 - 21516432
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 251  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516485 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21516708 - 21516655
Alignment:
Q  198 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 251  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516708 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University