View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_4 (Length: 728)
Name: NF1519_high_4
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 78 - 714
Target Start/End: Original strand, 46958990 - 46959621
Alignment:
| Q |
78 |
agggtagaatacacctttgtatagtgagtgatccaaggtaactaatctaacaaccttccacctaatccataactaacttctaattgccttaaaccaacat |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46958990 |
agggtagaatacacctttgtatagtgagtgatccaaggtaactaatctaacaaacttccacctaatc-ataactaacttctaattgccttaaaccaacat |
46959088 |
T |
|
| Q |
178 |
ctaacatgaagggttcatctactcattccatcccattgtcattacaaatcataattaatatcagtatttgtctctaacaagacattctgtcgaatcaaat |
277 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46959089 |
ctaacatgaagggttcatctgtacagaatatcccattgtcattacaaatcataattaatatcaggatttgtctctaacaagacattctgtcgaatcaaat |
46959188 |
T |
|
| Q |
278 |
cactacttgttgaaaaacaagcgggaggattcacccagccttgagaagaagtagaaccatgagcttgccaacagtaagatcttctattttctccaaagta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46959189 |
cactacttgttgaaaaacaagcgggaggattcacacagccttgagaagaagtagaaccatgagcttgccaacagtaagatcttctattttctccaaagta |
46959288 |
T |
|
| Q |
378 |
tgatggaagataaatattttcgagatatagtccttcacatggataggtatcactgcaggcaaatttaatggtttctttggaggccgaagttcctataata |
477 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46959289 |
tgatggaagataaatattttcgagatgtagtccttcacatggataggtatcactgcaggcaaatttaatggtttcttcggaggccgaagttcctataata |
46959388 |
T |
|
| Q |
478 |
ttaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagnnnnnnntcttcagttgaattaaaa |
577 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
46959389 |
ttaatgaaggatatgttcaccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagaaaaaaatcatcagttgaattaaaa |
46959488 |
T |
|
| Q |
578 |
tcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactgacatacatgattataatcgatgaaaattatgaaatcagc |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46959489 |
tcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactg----acatgattataattgatgaaaattatgaaatcagc |
46959584 |
T |
|
| Q |
678 |
tattatattctacaaatcataaagacaattcaaaact |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46959585 |
tattatattctacaaatcataaagacaattcaaaact |
46959621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 230 - 642
Target Start/End: Complemental strand, 44522972 - 44522569
Alignment:
| Q |
230 |
aattaatatcagtatttgtctctaacaagacattctgtcgaatcaaatcactacttgttgaaaaacaagcgggaggattcacccagccttgagaagaagt |
329 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||| ||| |||||||||||||| ||||| || | ||||| | ||| | || |||| |||| |
|
|
| T |
44522972 |
aattaatagcaggatttggctctaacaagacattctgtctaattaaatcactacttgtcgaaaagcagacaggagggtacacataaccctgagcagaa-- |
44522875 |
T |
|
| Q |
330 |
agaaccatgagcttgccaacagtaagatcttctattttctccaaagtatgatggaagataaatattttcgagatatagtccttcacatggataggtatca |
429 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||||| |||||| | | |||| |
|
|
| T |
44522874 |
----ccatgagcttgccaacaataagatcttgtatttcctccaaagtatgatcgaagaaaaatattttccagatatagtccttcgcatggagaagcatca |
44522779 |
T |
|
| Q |
430 |
ctgcaggcaaatttaatggtttctttggaggccgaagttcctataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattc |
529 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
44522778 |
ctgcaggcaaatttaatggtttcttcggtggccgaagttccttgaatattaatgaaggatatgttccccacttgaacagctgaagtctgcatcacaatgc |
44522679 |
T |
|
| Q |
530 |
aggacattattacattcttacagnnnnnnntcttcagttgaattaaaatcattatgaaagttcattaatttgaatccttgtaggagatt-gacaagaatg |
628 |
Q |
| |
|
| || |||| ||| |||||| |||||||||||||| |||| || |||||| ||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
44522678 |
attac---attaaatttttacagcataatatcttcagttgaatt-aaattatcatgaaacttcattaatttgaatccttgttggagattcgacaggaatg |
44522583 |
T |
|
| Q |
629 |
tatgtcactgacat |
642 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44522582 |
tatgtcactgacat |
44522569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University