View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_41 (Length: 370)
Name: NF1519_high_41
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 38954617 - 38954987
Alignment:
| Q |
1 |
actccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccgataca |
100 |
Q |
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| T |
38954617 |
actccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccgataca |
38954716 |
T |
|
| Q |
101 |
atcatcaaaggcctttgtttggtaagtacataa---taattattgtttctattaatcgtacaaattattgttatataaccttagcttaatcttattttac |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38954717 |
atcatcaaaggcctttgtttggtaagtacataataataattattgtttctattaatcgtacaaattatagttatataaccttagcttaatcttattttac |
38954816 |
T |
|
| Q |
198 |
acatttacatatatataactaaatactcttaaggatttaagggatatatattgtcaacgtaataaagttttacatttacatcctatgaaaactaccattt |
297 |
Q |
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| T |
38954817 |
acatttacatatatataactaaatattgttaaggatttaagggatatatattgtcaacgtaataaagttttacatttacatccgatgaaaactaccattt |
38954916 |
T |
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| Q |
298 |
tgtcccatcatacttttgtcaaggtactttaaaattagtggtgtatgacatagaaaaagttgatatatatc |
368 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954917 |
tgtcacatcatacttttgttaaggtactttaaaattagtggtgtatgacatagaaaaagttgatatatatc |
38954987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 38975838 - 38975724
Alignment:
| Q |
1 |
actccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccgataca |
100 |
Q |
| |
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|||| ||||||| ||||| ||||| || | | ||||||||| ||||||||||||||||||| | ||||||||||| || |||||||| || ||| | |
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| T |
38975838 |
actcattcaagaacaacgcagcaaaaaccagcatacaaatactatgatagatcatcttctaagtttacaagaatcacaacctgagtactatactgatcaa |
38975739 |
T |
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| Q |
101 |
atcatcaaaggcctt |
115 |
Q |
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| T |
38975738 |
atcatcaaaggcctt |
38975724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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