View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_42 (Length: 369)

Name: NF1519_high_42
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_42
NF1519_high_42
[»] chr5 (8 HSPs)
chr5 (284-363)||(6424770-6424849)
chr5 (147-241)||(6424893-6424987)
chr5 (15-103)||(6425032-6425127)
chr5 (184-229)||(6489021-6489066)
chr5 (184-241)||(18789050-18789107)
chr5 (180-229)||(22522803-22522852)
chr5 (184-232)||(37054268-37054316)
chr5 (193-229)||(42817114-42817150)
[»] chr4 (12 HSPs)
chr4 (179-241)||(17423167-17423229)
chr4 (184-229)||(21317340-21317385)
chr4 (184-238)||(25783442-25783496)
chr4 (193-232)||(47015567-47015606)
chr4 (179-229)||(2434460-2434510)
chr4 (179-225)||(36662375-36662421)
chr4 (184-229)||(20799396-20799441)
chr4 (180-229)||(37872503-37872552)
chr4 (184-241)||(49473659-49473716)
chr4 (184-229)||(54500583-54500628)
chr4 (184-240)||(6087761-6087817)
chr4 (184-232)||(19997363-19997411)
[»] chr6 (3 HSPs)
chr6 (185-241)||(24373700-24373756)
chr6 (184-229)||(14918302-14918347)
chr6 (179-232)||(29283824-29283877)
[»] chr8 (4 HSPs)
chr8 (179-233)||(42700514-42700568)
chr8 (172-217)||(8837922-8837967)
chr8 (184-229)||(39821898-39821943)
chr8 (184-232)||(33996083-33996131)
[»] chr3 (7 HSPs)
chr3 (172-230)||(2078242-2078300)
chr3 (175-231)||(32753833-32753889)
chr3 (183-229)||(48656901-48656947)
chr3 (172-217)||(24145400-24145445)
chr3 (184-229)||(45431962-45432007)
chr3 (193-241)||(8238587-8238635)
chr3 (184-232)||(48022313-48022361)
[»] chr1 (10 HSPs)
chr1 (179-241)||(9616879-9616941)
chr1 (175-241)||(16033440-16033506)
chr1 (175-241)||(17669650-17669716)
chr1 (193-231)||(36679613-36679651)
chr1 (193-231)||(45003423-45003461)
chr1 (184-241)||(5503755-5503812)
chr1 (184-225)||(15764046-15764087)
chr1 (184-229)||(17139519-17139564)
chr1 (193-241)||(2884439-2884486)
chr1 (173-217)||(41142700-41142744)
[»] scaffold0016 (1 HSPs)
scaffold0016 (175-232)||(99042-99099)
[»] chr2 (12 HSPs)
chr2 (184-241)||(26999124-26999181)
chr2 (184-229)||(30089063-30089108)
chr2 (184-229)||(30125667-30125712)
chr2 (184-229)||(30243264-30243309)
chr2 (179-229)||(31815889-31815939)
chr2 (184-229)||(20565077-20565122)
chr2 (184-229)||(24592848-24592893)
chr2 (180-229)||(43043167-43043216)
chr2 (184-241)||(44810719-44810776)
chr2 (193-229)||(21929493-21929529)
chr2 (193-241)||(25186232-25186280)
chr2 (185-229)||(29544642-29544686)
[»] chr7 (5 HSPs)
chr7 (175-241)||(42829224-42829290)
chr7 (184-229)||(2916016-2916060)
chr7 (184-229)||(16537538-16537583)
chr7 (184-229)||(16628079-16628124)
chr7 (184-241)||(42753517-42753574)
[»] scaffold1149 (1 HSPs)
scaffold1149 (180-229)||(2342-2391)
[»] scaffold0262 (1 HSPs)
scaffold0262 (193-241)||(15920-15968)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 6424849 - 6424770
Alignment:
Q  284 acctgagaagtgaaattaaattgaggtggttcattaggccttctttgatcagaagcttcactcttctcagccttcttaga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424849 acctgagaagtgaaattaaattgaggtggttcattaggccttctttgatcagaagcttcactcttctcagccttcttaga 6424770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 6424987 - 6424893
Alignment:
Q  147 tataacaaacatattctaaataatcgaacttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||||    
T  6424987 tataacaaacatattctaaataatcgaacttgactcggttggtagggacaatgcataatatatacaaggtccggggttcaaaccccactcaccac 6424893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 6425127 - 6425032
Alignment:
Q  15 tctaaaaattcaacacttccttcaaccatatcttatattccaa-------atcttagtaacttgaacttccttcatttgccagctcctgtactacc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6425127 tctaaaaattcaacacttccttcaaccatatcttatattccaacatccaaatcttagtaacttgaacttccttcatttgccagctcctgtaatacc 6425032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 6489021 - 6489066
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  6489021 gttggtagggacaatgcataatatatgcaaggtctggggttcaaac 6489066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 18789050 - 18789107
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||||||||||| |||| |||| ||||||  ||||||||||| |||| ||||||    
T  18789050 gttggtagagacaatgcataaaatatgcaaggttcggggttcaaaccccagccaccac 18789107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 22522852 - 22522803
Alignment:
Q  180 ctcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||  ||||||| ||||||||| ||||||| |||||||||||    
T  22522852 ctcggttggtatggacaatgcataatatatgcaaggtccggggttcaaac 22522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 37054316 - 37054268
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||||||| ||||||| |||||||||| |||||  ||||||||||||||    
T  37054316 gttggtagggacaatgcataatatatataaggttcggggttcaaactcc 37054268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 42817150 - 42817114
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaac 229  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  42817150 gacaatgcataatatatacaaggtccggggttcaaac 42817114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 17423229 - 17423167
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||||||    
T  17423229 actcagttggtagagacaatgcataatatatgcaaggtccggggttcaaactccagccaccac 17423167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 21317385 - 21317340
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  21317385 gttggtagagacaatgcataatatatgcaaggtcaggggttcaaac 21317340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 25783496 - 25783442
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcac 238  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||||| |||||    
T  25783496 gttggtagggacaatgcataatatatgcaaggtccggggttcaaactccggtcac 25783442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 47015606 - 47015567
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  47015606 gacaatgcataatatatacaaggtctggggttcaaactcc 47015567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 2434510 - 2434460
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||| |||||||||||| ||| ||| ||||| |||||||||||||||||||    
T  2434510 actcagttggtagagacgatgcatactatatgcaaggtcaggggttcaaac 2434460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 36662421 - 36662375
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttc 225  Q
    |||| ||||||| |||||||| |||| ||||||||||||||||||||    
T  36662421 actcagttggtatagacaatgcataaaatatacaaggtcaggggttc 36662375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 20799441 - 20799396
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  20799441 gttggtagggacaatgcataatatatgcaaggtccggggttcaaac 20799396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 37872552 - 37872503
Alignment:
Q  180 ctcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||| ||||||| |||||||||| |||||| ||||| |||||    
T  37872552 ctcggttggtagggacaatgcataatatatataaggtccggggtacaaac 37872503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 49473659 - 49473716
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||  ||||||| ||||||||| ||||||| ||||||| ||| |||||||||||    
T  49473659 gttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccagtcaccac 49473716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 54500583 - 54500628
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||||||| |||||||||  |||||| |||||||||||    
T  54500583 gttggtagagacaatgcataatatatgtaaggtccggggttcaaac 54500628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 6087761 - 6087817
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcacca 240  Q
    ||||||| ||| |||| ||||||||| ||||||| ||||||||||| |||| |||||    
T  6087761 gttggtatagataatgcataatatatgcaaggtctggggttcaaaccccagccacca 6087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 19997411 - 19997363
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||||||||||||||| ||||||||| ||| ||  ||||||||||||||    
T  19997411 gttggtagagacaatgcataatatatgcaaagttcggggttcaaactcc 19997363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 24373756 - 24373700
Alignment:
Q  185 ttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||    
T  24373756 ttggtagagacaatgcataatatatgcaaggtcaggggttcaaaccccagccaccac 24373700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 14918347 - 14918302
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  14918347 gttggtagggacaatgcataatatatacaaggtctggggttcaaac 14918302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 29283824 - 29283877
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||| |||||||||||||||| ||||||||| |||||||  |||||||||||||    
T  29283824 actcagttggtagagacaatgtataatatatgcaaggtctagggttcaaactcc 29283877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 42700514 - 42700568
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaactcca 233  Q
    ||||||||||||||||||||| ||||||||| ||||||  | |||||||||||||    
T  42700514 actcggttggtagagacaatgcataatatatgcaaggtatgaggttcaaactcca 42700568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 8837922 - 8837967
Alignment:
Q  172 gaacttgactcggttggtagagacaatggataatatatacaaggtc 217  Q
    |||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  8837922 gaacttaactcggttgatagggacaatgcataatatatacaaggtc 8837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 39821898 - 39821943
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  39821898 gttggtagggacaatgcataatatatgcaaggtctggggttcaaac 39821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 33996083 - 33996131
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||||||||||||||| ||||||||| ||| ||  ||||||||||||||    
T  33996083 gttggtagagacaatgcataatatatgcaaagttcggggttcaaactcc 33996131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 2078242 - 2078300
Alignment:
Q  172 gaacttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaact 230  Q
    |||||| |||| |||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  2078242 gaacttaactcagttggtagagacaatgcataatatatgcaaggtttggggttcaaact 2078300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 32753833 - 32753889
Alignment:
Q  175 cttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactc 231  Q
    |||||||| |||| ||| ||||||| ||||||||||||||| | |||||||||||||    
T  32753833 cttgactcagttgatagggacaatgcataatatatacaaggcccggggttcaaactc 32753889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 48656947 - 48656901
Alignment:
Q  183 ggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    ||||| ||||||||||| ||||||||| ||||||| |||||||||||    
T  48656947 ggttgctagagacaatgcataatatatgcaaggtccggggttcaaac 48656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 24145400 - 24145445
Alignment:
Q  172 gaacttgactcggttggtagagacaatggataatatatacaaggtc 217  Q
    |||||| |||| |||||||| ||||||| |||||||||||||||||    
T  24145400 gaacttaactcagttggtagggacaatgcataatatatacaaggtc 24145445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 45431962 - 45432007
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  45431962 gttggtagggacaatgcataatatatgcaaggtccggggttcaaac 45432007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 8238587 - 8238635
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||| ||||||||| ||||||| |||||||||||||| | ||||||    
T  8238587 gacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 8238635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 48022361 - 48022313
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||||||||||||||| ||||||||| ||| ||  ||||||||||||||    
T  48022361 gttggtagagacaatgcataatatatgcaaagttcggggttcaaactcc 48022313  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 9616941 - 9616879
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||| |||| |||| |||||| ||||||||||||||||| | |||||||||||||| ||||||    
T  9616941 actcagttgctagaaacaatgcataatatatacaaggtccgcggttcaaactccagccaccac 9616879  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 16033506 - 16033440
Alignment:
Q  175 cttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||| |||| ||| ||||||| ||||||||| ||||||| |||||||||||||| | ||||||    
T  16033506 cttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 16033440  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 17669650 - 17669716
Alignment:
Q  175 cttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||| |||| ||| ||||||| ||||||||| ||||||  |||||||||||||| | ||||||    
T  17669650 cttgactcagttgatagggacaatgtataatatatgcaaggttcggggttcaaactccggccaccac 17669716  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 36679613 - 36679651
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactc 231  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  36679613 gacaatggataatatatgcaaggtccggggttcaaactc 36679651  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 45003423 - 45003461
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactc 231  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  45003423 gacaatggataatatatgcaaggtccggggttcaaactc 45003461  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 5503812 - 5503755
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||||| |||||| |||| |||||||||||  ||||||||||||||  |||||||    
T  5503812 gttggtagaaacaatgcataaaatatacaaggttcggggttcaaactccgatcaccac 5503755  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 15764046 - 15764087
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttc 225  Q
    |||||||  ||||||| |||||||||||||||||||||||||    
T  15764046 gttggtaaggacaatgcataatatatacaaggtcaggggttc 15764087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 17139564 - 17139519
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  17139564 gttggtagggacaatgcataatatattcaaggtccggggttcaaac 17139519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 2884486 - 2884439
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  2884486 gacaatgcataatatatacaagatcgggggttcaaactcc-gtcaccac 2884439  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 41142744 - 41142700
Alignment:
Q  173 aacttgactcggttggtagagacaatggataatatatacaaggtc 217  Q
    |||||||||| |||| ||||||||||| ||||||||| |||||||    
T  41142744 aacttgactcagttgatagagacaatgcataatatatgcaaggtc 41142700  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 99042 - 99099
Alignment:
Q  175 cttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactcc 232  Q
    |||||||| |||| ||| ||||||| ||||||||| ||||||| ||||||||||||||    
T  99042 cttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactcc 99099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 26999124 - 26999181
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||||||||||| ||||||||| ||||||| | |||||||||||| | ||||||    
T  26999124 gttggtagagacaatgcataatatatgcaaggtctgcggttcaaactccggccaccac 26999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 30089063 - 30089108
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  30089063 gttggtagggacaatgcataatatatacaaggtccggggttcaaac 30089108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 30125667 - 30125712
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  30125667 gttggtagggacaatgcataatatatacaaggtccggggttcaaac 30125712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 30243264 - 30243309
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||    
T  30243264 gttggtagagacaatgcataatatatacaaggttcggggttcaaac 30243309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 31815939 - 31815889
Alignment:
Q  179 actcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||| |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  31815939 actcagttggtagggacaatgcataatatatgcaaggtccggggttcaaac 31815889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 20565122 - 20565077
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  20565122 gttggtagggacaatgcataatatatgcaaggtccggggttcaaac 20565077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 24592893 - 24592848
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  24592893 gttggtagggacaatgcataatatatgcaaggtctggggttcaaac 24592848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 43043216 - 43043167
Alignment:
Q  180 ctcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    ||||||||||| |||||||| ||||| ||| ||||||| |||||||||||    
T  43043216 ctcggttggtatagacaatgcataatgtatgcaaggtccggggttcaaac 43043167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 44810719 - 44810776
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||||| ||||  ||||||||| ||||||| ||||||||||| |||| ||||||    
T  44810719 gttggtagaggcaatacataatatatgcaaggtccggggttcaaaccccagccaccac 44810776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 21929493 - 21929529
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaac 229  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  21929493 gacaatgcataaaatatacaaggtcaggggttcaaac 21929529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 25186280 - 25186232
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||| ||||||||| ||||||| ||||||||||| |||| ||||||    
T  25186280 gacaatgcataatatatgcaaggtccggggttcaaaccccagccaccac 25186232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 29544642 - 29544686
Alignment:
Q  185 ttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    ||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  29544642 ttggtagggacaatgcataatatatgcaaggtccggggttcaaac 29544686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 42829290 - 42829224
Alignment:
Q  175 cttgactcggttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    |||||||| |||| ||| ||||||| ||||||||| |||| || |||||||||||||| | ||||||    
T  42829290 cttgactcagttgatagggacaatgcataatatatgcaagctccggggttcaaactccggccaccac 42829224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 2916016 - 2916060
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  2916016 gttggtag-gacaatgtataatatatacaaggtccggggttcaaac 2916060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 16537583 - 16537538
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||    
T  16537583 gttggtagggataatgcataatatatacaaggtctggggttcaaac 16537538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 16628079 - 16628124
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||    
T  16628079 gttggtagggataatgcataatatatacaaggtctggggttcaaac 16628124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 42753574 - 42753517
Alignment:
Q  184 gttggtagagacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||| || |||| || ||||||||| ||||||| |||||||||||||||| ||||||    
T  42753574 gttggaagggacagtgcataatatatgcaaggtccggggttcaaactccagccaccac 42753517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 2342 - 2391
Alignment:
Q  180 ctcggttggtagagacaatggataatatatacaaggtcaggggttcaaac 229  Q
    |||||||||||| ||||||| ||||||||| ||||||  |||||||||||    
T  2342 ctcggttggtagggacaatgcataatatatgcaaggtttggggttcaaac 2391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 15968 - 15920
Alignment:
Q  193 gacaatggataatatatacaaggtcaggggttcaaactccagtcaccac 241  Q
    ||||||| ||||||||| ||||||| ||||||||||| |||| ||||||    
T  15968 gacaatgtataatatatgcaaggtctggggttcaaaccccagccaccac 15920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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