View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_43 (Length: 368)
Name: NF1519_high_43
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 32377257 - 32376901
Alignment:
| Q |
1 |
caacagctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaaccctttga |
100 |
Q |
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| T |
32377257 |
caacagctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaacccttcga |
32377158 |
T |
|
| Q |
101 |
gaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatca |
200 |
Q |
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| T |
32377157 |
gaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatca |
32377058 |
T |
|
| Q |
201 |
ttatcatatctctcacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaacatgtatgttcatatagctacatttatgc |
300 |
Q |
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| T |
32377057 |
ttatcatatctctcacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaacatgtatgttcatatagctacatttatgc |
32376958 |
T |
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| Q |
301 |
tgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatg |
357 |
Q |
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| T |
32376957 |
tgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatg |
32376901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 32365568 - 32365216
Alignment:
| Q |
5 |
agctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaaccctttgagaaa |
104 |
Q |
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| T |
32365568 |
agctggattgtacactattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagagaaaccattcgagaaa |
32365469 |
T |
|
| Q |
105 |
aaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattat |
204 |
Q |
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| T |
32365468 |
aaatatgcatttgcatctaaagatcaacaaggaggtattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattat |
32365369 |
T |
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| Q |
205 |
catatctctcacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgtt |
304 |
Q |
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| T |
32365368 |
catatctctcacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaacatgtatgttcatatagctacatttatgctgtt |
32365269 |
T |
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| Q |
305 |
ttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatg |
357 |
Q |
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| T |
32365268 |
ttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatg |
32365216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 36122044 - 36121866
Alignment:
| Q |
147 |
gaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgtgtttggatgga |
246 |
Q |
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||||||||||| || |||||||| |||||||||||||||||| | ||| | || | ||||| | ||||||||||| ||||||||| ||||| |||| |
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| T |
36122044 |
gaaaatagaccaaagtggagtggtggaatacttgacatttgggacgatatctctcaagcatatttatcacttttctgtactttttgtgcatttggttgga |
36121945 |
T |
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| Q |
247 |
acatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgttttgtatggctcccttttggat |
325 |
Q |
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| |||||||||||||| ||||| |||||||||||||| || || || |||||||| || |||||||| ||||||||||| |
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| T |
36121944 |
atatggagagacttggctttggaaacatgtatgttcacattgccacttttatgcttttctgtatggcccccttttggat |
36121866 |
T |
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