View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_45 (Length: 366)

Name: NF1519_high_45
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_45
NF1519_high_45
[»] chr3 (4 HSPs)
chr3 (18-361)||(14555303-14555646)
chr3 (204-282)||(54455259-54455336)
chr3 (23-53)||(55293594-55293624)
chr3 (204-264)||(26047171-26047231)
[»] chr5 (7 HSPs)
chr5 (254-302)||(37390777-37390825)
chr5 (22-53)||(12419379-12419410)
chr5 (23-53)||(753002-753032)
chr5 (23-53)||(753745-753775)
chr5 (23-53)||(3890321-3890351)
chr5 (23-53)||(43137207-43137237)
chr5 (243-284)||(27859225-27859266)
[»] chr7 (10 HSPs)
chr7 (206-269)||(45644444-45644506)
chr7 (23-53)||(24683953-24683983)
chr7 (23-53)||(27733883-27733913)
chr7 (23-53)||(33637587-33637617)
chr7 (23-53)||(39648787-39648817)
chr7 (23-53)||(44806390-44806420)
chr7 (23-53)||(49144964-49144994)
chr7 (23-53)||(49145092-49145122)
chr7 (23-64)||(27733143-27733183)
chr7 (209-241)||(35211490-35211522)
[»] chr8 (15 HSPs)
chr8 (22-53)||(41157727-41157758)
chr8 (23-53)||(1944268-1944298)
chr8 (23-53)||(4465284-4465314)
chr8 (23-53)||(8161331-8161361)
chr8 (23-53)||(8162074-8162104)
chr8 (23-53)||(8761460-8761490)
chr8 (23-53)||(8762092-8762122)
chr8 (23-53)||(12761316-12761346)
chr8 (23-53)||(25834930-25834960)
chr8 (23-53)||(25835562-25835592)
chr8 (23-53)||(32844911-32844941)
chr8 (23-53)||(32845655-32845685)
chr8 (23-53)||(44381599-44381629)
chr8 (202-243)||(6413736-6413777)
chr8 (23-59)||(32846288-32846323)
[»] chr4 (13 HSPs)
chr4 (22-53)||(2117272-2117303)
chr4 (22-53)||(24947569-24947600)
chr4 (23-53)||(8987648-8987678)
chr4 (23-53)||(8988280-8988310)
chr4 (23-53)||(9888212-9888242)
chr4 (23-53)||(20590145-20590175)
chr4 (23-53)||(24944853-24944883)
chr4 (23-53)||(37350548-37350578)
chr4 (23-53)||(37351180-37351210)
chr4 (23-53)||(43022586-43022616)
chr4 (23-53)||(46105348-46105378)
chr4 (23-64)||(47555615-47555655)
chr4 (22-50)||(24944336-24944364)
[»] scaffold2127 (1 HSPs)
scaffold2127 (23-53)||(783-813)
[»] scaffold0381 (1 HSPs)
scaffold0381 (23-53)||(10302-10332)
[»] chr6 (5 HSPs)
chr6 (23-53)||(4109136-4109166)
chr6 (23-53)||(33320365-33320395)
chr6 (23-53)||(35159269-35159299)
chr6 (203-284)||(28751396-28751477)
chr6 (204-269)||(29460568-29460633)
[»] chr2 (3 HSPs)
chr2 (23-53)||(1513692-1513722)
chr2 (23-53)||(6931211-6931241)
chr2 (23-53)||(9543455-9543485)
[»] chr1 (5 HSPs)
chr1 (23-53)||(16301365-16301395)
chr1 (23-53)||(19321239-19321269)
chr1 (23-53)||(28571482-28571512)
chr1 (23-53)||(28572225-28572255)
chr1 (23-53)||(47136941-47136971)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 14555646 - 14555303
Alignment:
Q  18 agaataaaattttgcgttcgggttaactttaagaaaataaaagattaatgtcgtaaatagtgctacatatgatttaaaattctcggtcatctcttgtaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14555646 agaataaaattttgcgttcgggttaactttaagaaaataagagattaatgtcgtaaatagtgctacatatgatttaaaattctcggtcatctcttgtaaa 14555547  T
Q  118 agatgatgcttaactcaaaggttatccaaacatgtaaccctaaatatgcacgttgaggtttctacaaatattaaatattgataggaaaaaattaattttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14555546 agatgatgcttaactcaaaggttatccaaacatgtaaccctaaatatgcacgttgaggtttctacaaatattaaatattgataggaaaaaattaattttc 14555447  T
Q  218 aacttttaaaataataaattgacataactttcaatacatcatttttatttttggtatattaacatgttaaggtttcaatatgttaacaaatgattgttcn 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14555446 aacttttaaaataataaattgacataactttcaatacatcatttttatttttggtatattaacatgttaaggtttcaatatgttaacaaatgattgttca 14555347  T
Q  318 nnnnnnnntatatgttagcaaatgcgtgttttcatattcttcga 361  Q
             |||||||||||||||||||||||||| ||||||||    
T  14555346 aaaaaaaaaatatgttagcaaatgcgtgttttcattttcttcga 14555303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 54455259 - 54455336
Alignment:
Q  204 aaaaattaattttcaacttttaaaataataaattgacataactttcaatacatcatttttatttttggtatattaacat 282  Q
    |||||||||||| |||||||| ||  | |||||||||| || ||| ||||||| | |||||||||||||||||||||||    
T  54455259 aaaaattaattt-caactttttaataagtaaattgacacaattttaaatacataaattttatttttggtatattaacat 54455336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 55293624 - 55293594
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  55293624 aaaattttgcgttcgggttaactttaagaaa 55293594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 26047231 - 26047171
Alignment:
Q  204 aaaaattaattttcaacttttaaaataataaattgacataactttcaatacatcattttta 264  Q
    ||||||||||||| ||||||| ||| |||||||||| |||| |||||| || | |||||||    
T  26047231 aaaaattaatttttaacttttcaaaaaataaattgatataattttcaaaacttaattttta 26047171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 37390777 - 37390825
Alignment:
Q  254 catcatttttatttttggtatattaacatgttaaggtttcaatatgtta 302  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37390777 catcatttttatttttggtatattaacatgttaaggtttccacatgtta 37390825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 12419410 - 12419379
Alignment:
Q  22 taaaattttgcgttcgggttaactttaagaaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  12419410 taaaattttgcgttcgggttaactttaagaaa 12419379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 753032 - 753002
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  753032 aaaattttgcgttcgggttaactttaagaaa 753002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 753775 - 753745
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  753775 aaaattttgcgttcgggttaactttaagaaa 753745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 3890351 - 3890321
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  3890351 aaaattttgcgttcgggttaactttaagaaa 3890321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 43137237 - 43137207
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  43137237 aaaattttgcgttcgggttaactttaagaaa 43137207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 27859225 - 27859266
Alignment:
Q  243 aactttcaatacatcatttttatttttggtatattaacatgt 284  Q
    |||||||||||||| |||||||| |||||| |||||||||||    
T  27859225 aactttcaatacataatttttatctttggtgtattaacatgt 27859266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 45644444 - 45644506
Alignment:
Q  206 aaattaattttcaacttttaaaataataaattgacataactttcaatacatcatttttattttt 269  Q
    ||||||||||||||||||||| | ||||||||||||||| |||| |||||| |||| |||||||    
T  45644444 aaattaattttcaacttttaaga-aataaattgacataattttctatacataatttatattttt 45644506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 24683983 - 24683953
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  24683983 aaaattttgcgttcgggttaactttaagaaa 24683953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 27733913 - 27733883
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  27733913 aaaattttgcgttcgggttaactttaagaaa 27733883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 33637617 - 33637587
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  33637617 aaaattttgcgttcgggttaactttaagaaa 33637587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 39648817 - 39648787
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  39648817 aaaattttgcgttcgggttaactttaagaaa 39648787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 44806390 - 44806420
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  44806390 aaaattttgcgttcgggttaactttaagaaa 44806420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 49144994 - 49144964
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  49144994 aaaattttgcgttcgggttaactttaagaaa 49144964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 49145122 - 49145092
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  49145122 aaaattttgcgttcgggttaactttaagaaa 49145092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 27733183 - 27733143
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaaataaaagatta 64  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  27733183 aaaattttgcgttcgggttaactttaag-gaataaaagatta 27733143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 35211490 - 35211522
Alignment:
Q  209 ttaattttcaacttttaaaataataaattgaca 241  Q
    |||||||||||||||||||| ||||||||||||    
T  35211490 ttaattttcaacttttaaaaaaataaattgaca 35211522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 41157727 - 41157758
Alignment:
Q  22 taaaattttgcgttcgggttaactttaagaaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  41157727 taaaattttgcgttcgggttaactttaagaaa 41157758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 1944268 - 1944298
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  1944268 aaaattttgcgttcgggttaactttaagaaa 1944298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 4465314 - 4465284
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  4465314 aaaattttgcgttcgggttaactttaagaaa 4465284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 8161361 - 8161331
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8161361 aaaattttgcgttcgggttaactttaagaaa 8161331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 8162104 - 8162074
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8162104 aaaattttgcgttcgggttaactttaagaaa 8162074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 8761460 - 8761490
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8761460 aaaattttgcgttcgggttaactttaagaaa 8761490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 8762092 - 8762122
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8762092 aaaattttgcgttcgggttaactttaagaaa 8762122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 12761316 - 12761346
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  12761316 aaaattttgcgttcgggttaactttaagaaa 12761346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 25834960 - 25834930
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  25834960 aaaattttgcgttcgggttaactttaagaaa 25834930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 25835592 - 25835562
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  25835592 aaaattttgcgttcgggttaactttaagaaa 25835562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 32844911 - 32844941
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  32844911 aaaattttgcgttcgggttaactttaagaaa 32844941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 32845655 - 32845685
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  32845655 aaaattttgcgttcgggttaactttaagaaa 32845685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 44381629 - 44381599
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  44381629 aaaattttgcgttcgggttaactttaagaaa 44381599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 6413736 - 6413777
Alignment:
Q  202 gaaaaaattaattttcaacttttaaaataataaattgacata 243  Q
    ||||||||||||||||||||||||| | ||||| ||||||||    
T  6413736 gaaaaaattaattttcaacttttaacaaaataagttgacata 6413777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 32846288 - 32846323
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaaataaaa 59  Q
    ||||||||||||||||||||||||||| |||||||||    
T  32846288 aaaattttgcgttcgggttaactttaa-aaaataaaa 32846323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 2117272 - 2117303
Alignment:
Q  22 taaaattttgcgttcgggttaactttaagaaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  2117272 taaaattttgcgttcgggttaactttaagaaa 2117303  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 24947600 - 24947569
Alignment:
Q  22 taaaattttgcgttcgggttaactttaagaaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  24947600 taaaattttgcgttcgggttaactttaagaaa 24947569  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 8987648 - 8987678
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8987648 aaaattttgcgttcgggttaactttaagaaa 8987678  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 8988280 - 8988310
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  8988280 aaaattttgcgttcgggttaactttaagaaa 8988310  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 9888242 - 9888212
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  9888242 aaaattttgcgttcgggttaactttaagaaa 9888212  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 20590145 - 20590175
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  20590145 aaaattttgcgttcgggttaactttaagaaa 20590175  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 24944883 - 24944853
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  24944883 aaaattttgcgttcgggttaactttaagaaa 24944853  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 37350548 - 37350578
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  37350548 aaaattttgcgttcgggttaactttaagaaa 37350578  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 37351180 - 37351210
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  37351180 aaaattttgcgttcgggttaactttaagaaa 37351210  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 43022586 - 43022616
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  43022586 aaaattttgcgttcgggttaactttaagaaa 43022616  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 46105348 - 46105378
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  46105348 aaaattttgcgttcgggttaactttaagaaa 46105378  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 47555655 - 47555615
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaaataaaagatta 64  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  47555655 aaaattttgcgttcgggttaactttaag-gaataaaagatta 47555615  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 24944364 - 24944336
Alignment:
Q  22 taaaattttgcgttcgggttaactttaag 50  Q
    |||||||||||||||||||||||||||||    
T  24944364 taaaattttgcgttcgggttaactttaag 24944336  T

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Target: scaffold2127 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 783 - 813
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  783 aaaattttgcgttcgggttaactttaagaaa 813  T

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Target: scaffold0381 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 10302 - 10332
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  10302 aaaattttgcgttcgggttaactttaagaaa 10332  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 4109136 - 4109166
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  4109136 aaaattttgcgttcgggttaactttaagaaa 4109166  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 33320395 - 33320365
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  33320395 aaaattttgcgttcgggttaactttaagaaa 33320365  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 35159269 - 35159299
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  35159269 aaaattttgcgttcgggttaactttaagaaa 35159299  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 28751477 - 28751396
Alignment:
Q  203 aaaaaattaattttcaacttttaaaataataaattgacataactttcaatacatcatttttatttttggtatattaacatgt 284  Q
    |||||| ||||||||||  |||  || |||| ||||||| || ||||||||||| |||| ||| |||| |||||||||||||    
T  28751477 aaaaaaataattttcaaaatttttaaaaatagattgacacaattttcaatacataatttatatctttgatatattaacatgt 28751396  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 29460633 - 29460568
Alignment:
Q  204 aaaaattaattttcaacttttaaaataataaattgacataactttcaatacatcatttttattttt 269  Q
    ||||||| |||||||||||||  || ||| ||||| || ||||||||||| ||||||| |||||||    
T  29460633 aaaaatttattttcaactttttgaaaaattaattggcacaactttcaatatatcatttctattttt 29460568  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 1513722 - 1513692
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  1513722 aaaattttgcgttcgggttaactttaagaaa 1513692  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 6931211 - 6931241
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  6931211 aaaattttgcgttcgggttaactttaagaaa 6931241  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 9543485 - 9543455
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  9543485 aaaattttgcgttcgggttaactttaagaaa 9543455  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 16301365 - 16301395
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  16301365 aaaattttgcgttcgggttaactttaagaaa 16301395  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 19321269 - 19321239
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  19321269 aaaattttgcgttcgggttaactttaagaaa 19321239  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 28571482 - 28571512
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  28571482 aaaattttgcgttcgggttaactttaagaaa 28571512  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 28572225 - 28572255
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  28572225 aaaattttgcgttcgggttaactttaagaaa 28572255  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 47136941 - 47136971
Alignment:
Q  23 aaaattttgcgttcgggttaactttaagaaa 53  Q
    |||||||||||||||||||||||||||||||    
T  47136941 aaaattttgcgttcgggttaactttaagaaa 47136971  T

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