View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_47 (Length: 359)
Name: NF1519_high_47
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 145 - 349
Target Start/End: Complemental strand, 13753088 - 13752888
Alignment:
| Q |
145 |
atgcatctgccattgccaacattattgatctcataaacttggagtgggaggtgaagctgtgtcactctcttagggaaggaaatgctagtgcggattttct |
244 |
Q |
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| T |
13753088 |
atgcatctgccattgccaacattattgatctcatgaacttggagtgggaggtgaagctgtgtcactctcttagggaaggaaatgctagtgcggattttct |
13752989 |
T |
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| Q |
245 |
cgcaaagtggggctctagtaacgacatcaagtggaagttgtggaataccccggcccccagaagatttgaaagccattcttctcaatgatttaatgaggac |
344 |
Q |
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| T |
13752988 |
cgcaaagtggggctctagtaacgacatcaagtggaagttgcggaatacc----cccccggaagatttgaaagccattctcctcaatgattcaatgaggac |
13752893 |
T |
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| Q |
345 |
ctttg |
349 |
Q |
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||||| |
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| T |
13752892 |
ctttg |
13752888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 13753294 - 13753166
Alignment:
| Q |
18 |
ggtatgattagacatagtgatggcagctgggnnnnnnngggttcagcagctacctaggactttccaataacacctatacagaaatcatggctatttacca |
117 |
Q |
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| T |
13753294 |
ggtatgattagacatggtgatggcagctgggtttttcagg-ttcagcagctacctaggactttccaataacacctatgcagaaatcattgctatttacca |
13753196 |
T |
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| Q |
118 |
agggttgcatcttgcaaggaacttcggatg |
147 |
Q |
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| T |
13753195 |
agggttgcatcttgcaaggaacttcggatg |
13753166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 292
Target Start/End: Original strand, 34583787 - 34583941
Alignment:
| Q |
145 |
atgcatctgccattgccaacattattgatctcata----aacttggagtgggaggtgaagctgtgtcactctctta-gggaaggaaatgctagtgcggat |
239 |
Q |
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| T |
34583787 |
atgcatctgccattgccaacattgtttgtttcatatatgaacttggattgagaggtaaagttatgtcactctcttaagggaaggaaatgctagtgtggat |
34583886 |
T |
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| Q |
240 |
tttctcgcaaagtggggctcta--gtaacgacatcaagtggaagttgtggaatac |
292 |
Q |
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| T |
34583887 |
tttctcgtaaaatggggctctagtgtaacgatatcaagtagaagttgttgaatac |
34583941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 34583663 - 34583709
Alignment:
| Q |
101 |
atcatggctatttaccaagggttgcatcttgcaaggaacttcggatg |
147 |
Q |
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| T |
34583663 |
atcatggctatttaccaaggtttgcgtcttgcgaggaacttcagatg |
34583709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 34583630 - 34583663
Alignment:
| Q |
56 |
gggttcagcagctacctaggactttccaataaca |
89 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
34583630 |
gggttcagcagttacctaggactttccaataaca |
34583663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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