View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_48 (Length: 355)
Name: NF1519_high_48
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 10054795 - 10055149
Alignment:
| Q |
1 |
caatatcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgca |
100 |
Q |
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| T |
10054795 |
caatatccttattgtgtctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgca |
10054894 |
T |
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| Q |
101 |
gcataaactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctcaatttttcaaattctcctttcattgc |
200 |
Q |
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| T |
10054895 |
gcataaactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagactcaatttttcaaattctcctttcattgc |
10054994 |
T |
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| Q |
201 |
ttcttttagtcgtgactacacattcttaggctgttcatctcagaatattgggtcacaattcattcccattgattgtcttagtaattcaacatattttgta |
300 |
Q |
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| T |
10054995 |
ttcttttagtcgtgactacacattcttaggctgttcatctcagaatattgggtcacaattcattcccattgattgtcttagtaattcaacatattttgta |
10055094 |
T |
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| Q |
301 |
tcagccattccttcagttaagtttgacaattctctatctggttgctctgttataa |
355 |
Q |
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| T |
10055095 |
tcagccattcgttcagttagctttgtcaattctctatctggttgctctgttataa |
10055149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 48473202 - 48473142
Alignment:
| Q |
17 |
gctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttcctta |
77 |
Q |
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| T |
48473202 |
gctatcctggtttcaaattaagttgtactgatgatagcaaaacggttctaacacttcctta |
48473142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 48475841 - 48475671
Alignment:
| Q |
6 |
tcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgcagcata |
105 |
Q |
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||||| ||||||||||||||||||||| || |||||| |||||| ||||||| |||||| ||||||||| || | || ||||| || |||| || |
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| T |
48475841 |
tccttattgtggctatcctggtttcaaattgtcttgtactaatgatggcaaaactgttctaacacttccttattcaggagtgttctatgttcgcaaaatc |
48475742 |
T |
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| Q |
106 |
aactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctcaa |
176 |
Q |
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| T |
48475741 |
aactatctcgaacaccacatacaagtctatgaccctcatcgttgccttccaaatcgtcttctaagtctcaa |
48475671 |
T |
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