View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_6 (Length: 697)
Name: NF1519_high_6
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 171 - 682
Target Start/End: Original strand, 5531680 - 5532190
Alignment:
| Q |
171 |
agatgtttttgtaattttgatacccgtagaattcaaggtttatagtaacaacaatgtatcacacatttaaggaccgaaatgaatgattattgcctacata |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531680 |
agatgtttttgtaattttgatacccgtagaattcaaggtttatagtaacaacaatgtatcacacatttaaggaccgaaatgaatgattattgcctacata |
5531779 |
T |
|
| Q |
271 |
tttcgagaaaactgtcatttttgttctttaatgtgtcaagcaagtccttgatgtgtcaaaattacaaaacatgatgtgtctttgctaagtgagtttggtc |
370 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531780 |
ttt-gagaaaaccgtcatttttgttctttaatgtgtcaagcaagtccttgatgtgtcaaaattacaaaacatgatgtgtctttgctaagtgagtttggtc |
5531878 |
T |
|
| Q |
371 |
cttgaatgtatctttcattagttaatttgatcctcaaatatatctttcgttggtcaaattaattagtccataaaattacagacaaaagatacacttaaat |
470 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
5531879 |
cttgaatgtatctttcattagttagtttgatcctcaaatatatctttcgttggtcaaattaattaatccataaaattacggacaaaagatacacttaaat |
5531978 |
T |
|
| Q |
471 |
tttcttttttccaattttaatacattcgtggactataatcgcaccagcccacatattcagagaccaaaatcacaatttactcaaatatttcatatttctt |
570 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
5531979 |
tttcttttttccaattttaatacattcatggactataatcgcaccggcccacatattcagagaccaaaatcacgatttactcaaatatttcacatttctt |
5532078 |
T |
|
| Q |
571 |
gaaaatcattatcacatcacgagttgtgttcagattgcagaagatcttgatttagtactcaacatacaaaggaaattcagctacctccaaaccataccag |
670 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5532079 |
gaaaatcattatcaaatcacgagttgtgttcagattgcagaagatcttgatttagtactcaacatacaaaggaaattcagctacctccaaaccataccag |
5532178 |
T |
|
| Q |
671 |
gattgctttcat |
682 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5532179 |
gattgctttcat |
5532190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 5531515 - 5531629
Alignment:
| Q |
51 |
aatagttcttgaatgcatcaaaattataaaaagatacctaaacacannnnnnnncattacttagtttagtcctttaatccgtctttcattagttagttgt |
150 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531515 |
aatagttcttgaatgtatcaaaattataaaaagatacttaaacacattttttttcgttacttagtttagtcctttaatccgtctttcattagttagtttg |
5531614 |
T |
|
| Q |
151 |
gtcttcaaatgtgtt |
165 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5531615 |
gtcttcaaatgtgtt |
5531629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 5531459 - 5531493
Alignment:
| Q |
17 |
aaatatgagtaagcaacaaatttggtctttaaata |
51 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5531459 |
aaatatgagtaagcaacaattttggtctttaaata |
5531493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 15316556 - 15316614
Alignment:
| Q |
344 |
atgtgtctttgctaagtgagtttggtccttgaatgtatctttcattagttaatttgatc |
402 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15316556 |
atgtgtctttccttggtgagtttggtccttgaatgtatctttcattagttaatttgatc |
15316614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 12544814 - 12544896
Alignment:
| Q |
344 |
atgtgtctttgctaagtgagtttggtccttgaatgtatctttcattagttaatttgatcctcaaatatatctttcgttggtca |
426 |
Q |
| |
|
|||||||||| || |||| ||||||| || ||||||||||| |||||||| ||||||| | ||| ||||||||||| |||| |
|
|
| T |
12544814 |
atgtgtcttttcttagtgtgtttggttctcaaatgtatcttttattagttagtttgatctttgaatgtatctttcgttagtca |
12544896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University