View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_66 (Length: 312)

Name: NF1519_high_66
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_66
NF1519_high_66
[»] chr5 (13 HSPs)
chr5 (13-293)||(7164105-7164383)
chr5 (117-250)||(1145793-1145926)
chr5 (176-264)||(17644501-17644591)
chr5 (176-240)||(40266534-40266598)
chr5 (105-166)||(25759856-25759917)
chr5 (105-166)||(25787842-25787903)
chr5 (118-163)||(33037385-33037430)
chr5 (116-166)||(40266589-40266639)
chr5 (117-166)||(1145169-1145218)
chr5 (176-217)||(17344802-17344843)
chr5 (119-188)||(40266401-40266470)
chr5 (107-167)||(7826128-7826188)
chr5 (187-219)||(36580302-36580334)
[»] chr7 (10 HSPs)
chr7 (171-237)||(149036-149102)
chr7 (84-190)||(26009368-26009470)
chr7 (105-211)||(23345002-23345108)
chr7 (176-237)||(28139384-28139445)
chr7 (85-144)||(28138759-28138814)
chr7 (120-166)||(28139436-28139482)
chr7 (176-217)||(16984391-16984432)
chr7 (176-237)||(18146190-18146251)
chr7 (105-150)||(25428747-25428792)
chr7 (176-216)||(19931954-19931994)
[»] chr3 (7 HSPs)
chr3 (117-193)||(35105960-35106031)
chr3 (116-217)||(2652368-2652469)
chr3 (117-193)||(50663903-50663979)
chr3 (105-165)||(8150185-8150245)
chr3 (176-211)||(26998262-26998297)
chr3 (116-166)||(40517001-40517051)
chr3 (176-217)||(3540183-3540224)
[»] chr2 (5 HSPs)
chr2 (116-235)||(9539010-9539129)
chr2 (85-166)||(12965049-12965126)
chr2 (176-291)||(12965117-12965238)
chr2 (176-211)||(28360093-28360128)
chr2 (176-236)||(41101215-41101275)
[»] chr1 (7 HSPs)
chr1 (169-219)||(5603128-5603178)
chr1 (176-217)||(10884458-10884499)
chr1 (176-217)||(42883723-42883764)
chr1 (116-192)||(5602971-5603047)
chr1 (117-196)||(9862863-9862942)
chr1 (203-276)||(4329008-4329081)
chr1 (176-216)||(13280754-13280794)
[»] chr6 (5 HSPs)
chr6 (184-245)||(807124-807185)
chr6 (117-162)||(14830420-14830465)
chr6 (117-163)||(31522539-31522585)
chr6 (117-162)||(17436546-17436591)
chr6 (116-144)||(14153381-14153409)
[»] chr8 (6 HSPs)
chr8 (119-192)||(3588370-3588443)
chr8 (116-166)||(3588546-3588596)
chr8 (105-166)||(1349063-1349124)
chr8 (176-240)||(3588493-3588555)
chr8 (176-237)||(32035816-32035877)
chr8 (169-237)||(15908953-15909021)
[»] chr4 (2 HSPs)
chr4 (116-152)||(24974161-24974197)
chr4 (176-240)||(37999472-37999536)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 7164105 - 7164383
Alignment:
Q  13 aatatggttctatacataaatccagaattaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacccaaccaaacgt 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||    
T  7164105 aatatggttctatacataaatccagatttaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacctaa----acgt 7164200  T
Q  113 ttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaat 212  Q
    ||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  7164201 ttctgctcattcctaaagtaaatgaccaaaatgcctctacatgagttaactcacgttgcatggattaactcacgctaatgttaaatttgcatgagttaat 7164300  T
Q  213 tcacgttgtgtgacttaagtcacgcagaaaaa--acacactaaaatccaacgtgtgttaactcacgtttgattttgtttcatc 293  Q
    |||||  | |||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7164301 tcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtgagttaactcacgtttgattttgtttcatc 7164383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 1145926 - 1145793
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattcac 216  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||||| ||  | |||  |||||||||||||| ||| ||||||||||||||||| ||||    
T  1145926 gctcattcccaaagtaaatgatcaaaatgcccttacatgagttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcac 1145827  T
Q  217 gttgtgtgacttaagtcacgcagaaaaaacacac 250  Q
    | || ||| |||||||||||||||||||| ||||    
T  1145826 gctgcgtgtcttaagtcacgcagaaaaaatacac 1145793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 17644591 - 17644501
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaa--acacactaaaatccaacgtg 264  Q
    ||||||||||||||||||||||||| |||||||||| ||||| || ||||||||| |||||||||||||  ||||||||||| || |||||    
T  17644591 gttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaacccgacgtg 17644501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 40266598 - 40266534
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 240  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |  |||||||||||||||||||    
T  40266598 gttaactcacgctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcacgcaga 40266534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 25759856 - 25759917
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    |||||||  |||||||||||| ||||||||||||||||||||| || | | |||||||||||    
T  25759856 ccaaacggatctgctcattcctaaagtaaatgaccaaaatgtctctgcgtgagttaactcac 25759917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 25787903 - 25787842
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    ||||||| || |||||||| ||||| ||||||||||||||| |||| ||| |||||||||||    
T  25787903 ccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcac 25787842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 33037430 - 33037385
Alignment:
Q  118 ctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 163  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||    
T  33037430 ctcattcccaaagtaaatgaccaaaatgcccctacacatgttaact 33037385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 40266639 - 40266589
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    |||||||||||||||||||||||||||||| || | | | |||||||||||    
T  40266639 tgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcac 40266589  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 1145169 - 1145218
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    ||||||||||||||||||||||||||||| | ||||  | ||||||||||    
T  1145169 gctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcac 1145218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 17344843 - 17344802
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacg 217  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  17344843 gttaactcacgctagtgttaattttgcgtgagttaactcacg 17344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 40266401 - 40266470
Alignment:
Q  119 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgct 188  Q
    ||||||||||||||||||||||||||| || | | | ||||||||| |   ||||| |||||||||||||    
T  40266401 tcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcccgcagcatgagttaactcacgct 40266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 7826188 - 7826128
Alignment:
Q  107 aaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcaca 167  Q
    |||||||| ||||||||||||||| || | ||||||||  |||||| || |||||||||||    
T  7826188 aaacgtttttgctcattcccaaagaaatttaccaaaatacccctacgtatgttaactcaca 7826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 36580302 - 36580334
Alignment:
Q  187 ctagtgttaaatttgcatgagttaattcacgtt 219  Q
    ||||||||||||||||||||||||| |||||||    
T  36580302 ctagtgttaaatttgcatgagttaactcacgtt 36580334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 149036 - 149102
Alignment:
Q  171 catgggttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 237  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||    
T  149036 catgagttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcacgc 149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 26009368 - 26009470
Alignment:
Q  84 cgaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactc 183  Q
    |||||||||||||||||||||    ||| || ||||||||||||||||||||||||||||| | |||||  | |||||||||| | || || || |||||    
T  26009368 cgaattctgctctttacccaa----acgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacgtagcgtgagtcaactc 26009463  T
Q  184 acgctag 190  Q
    |||||||    
T  26009464 acgctag 26009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 23345108 - 23345002
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcat 204  Q
    ||||||| || |||||||||||||| ||||||  || | || || | | |||||||||||||  |||||| |||||||||| |||||||||||||||| |    
T  23345108 ccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaactcacgctgcatgagttaactcacactagtgttaaatttgcgt 23345009  T
Q  205 gagttaa 211  Q
    || ||||    
T  23345008 gaattaa 23345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 28139445 - 28139384
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 237  Q
    |||||||||||||||||||||||||||||||||||| | ||| || |||| |||| ||||||    
T  28139445 gttaactcacgctagtgttaaatttgcatgagttaagttacgctgcgtgagttaactcacgc 28139384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 28138759 - 28138814
Alignment:
Q  85 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaat 144  Q
    ||||||||||||||||||||    | | || |||||||||||||||||||||||||||||    
T  28138759 gaattctgctctttacccaa----atgattttgctcattcccaaagtaaatgaccaaaat 28138814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 28139482 - 28139436
Alignment:
Q  120 cattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    |||||||||||||||||||||||||| |||| | | |||||||||||    
T  28139482 cattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcac 28139436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 16984391 - 16984432
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacg 217  Q
    ||||||||||||||||||||||| ||| |||||||| |||||    
T  16984391 gttaactcacgctagtgttaaatatgcgtgagttaactcacg 16984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 18146190 - 18146251
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 237  Q
    ||||||||| ||||||||||||||||  || ||||| |||||||| | || |||||||||||    
T  18146190 gttaactcatgctagtgttaaatttgtgtgggttaagtcacgttgcgagagttaagtcacgc 18146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 25428747 - 25428792
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccct 150  Q
    ||||||| |||||||||||||||||||||||  |||||||| ||||    
T  25428747 ccaaacggttctgctcattcccaaagtaaatatccaaaatgcccct 25428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 19931994 - 19931954
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcac 216  Q
    ||||| ||||||||||||||||||||||||| |||| ||||    
T  19931994 gttaagtcacgctagtgttaaatttgcatgacttaactcac 19931954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 35106031 - 35105960
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 193  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||     ||| || ||||||||||||||||||    
T  35106031 gctcattcccaaagtaaatgaccaaaatgtcactacatgagttaact-----tgcgtgagttaactcacgctagtgt 35105960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 2652368 - 2652469
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 215  Q
    ||||| || |||||||||||| | | | || |||||| ||||||||||  |  ||| || ||||||||||||||||||||||||||||||| |||| |||    
T  2652368 tgctcgtttccaaagtaaatgtctatattgcccctacgtaagttaacttgcgctgcgtgagttaactcacgctagtgttaaatttgcatgacttaactca 2652467  T
Q  216 cg 217  Q
    ||    
T  2652468 cg 2652469  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 50663903 - 50663979
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 193  Q
    ||||||||||||||||||| ||||||||| ||||||  | |||||||||| | || || ||||||||| ||||||||    
T  50663903 gctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacgtagcgtgagttaactcaagctagtgt 50663979  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 8150185 - 8150245
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactca 165  Q
    |||||||||| ||||||||||||||| || ||||||||||  |||||| || |||||||||    
T  8150185 ccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactca 8150245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 26998297 - 26998262
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaa 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26998297 gttaactcacgctagtgttaaatttacatgagttaa 26998262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 40517001 - 40517051
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||| ||||    
T  40517001 tgctcattcctaaagtaaatgatcaaaatgtctctacgtaagttaagtcac 40517051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 3540224 - 3540183
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacg 217  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  3540224 gttaagtcacgctagtgttaaatttgcatgacttaactcacg 3540183  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 9539129 - 9539010
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 215  Q
    |||||||||||||||||||||  || | || |||| ||||||||||||  |||||  || |||||  ||||||||||||||||||||||||  | | |||    
T  9539129 tgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttgcattgtgtgagttaaaacacgctagtgttaaatttgcatgacgtgactca 9539030  T
Q  216 cgttgtgtgacttaagtcac 235  Q
    ||| | |||| |||||||||    
T  9539029 cgtagcgtgagttaagtcac 9539010  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 12965049 - 12965126
Alignment:
Q  85 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    ||||||||||||||||||||    |||||||||||||||  |||||||||||| |||||||  ||||| | |||||||||||    
T  12965049 gaattctgctctttacccaa----acgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcac 12965126  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 12965117 - 12965238
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtg-----acttaagtcacgcagaaaaaacacact--aaaatccaacgtgtgtt 268  Q
    |||||||||||||| |||||||||| |  ||||||| ||||| || |||     ||||||||||||||| |||||||||||  |||| ||| | || |||    
T  12965117 gttaactcacgctaatgttaaatttacgagagttaactcacgctgcgtgagataacttaagtcacgcaggaaaaacacactcaaaaacccagcatgagtt 12965216  T
Q  269 aactcacgtttgattttgtttca 291  Q
    ||||||||  |||||||||||||    
T  12965217 aactcacg-ctgattttgtttca 12965238  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 28360093 - 28360128
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaa 211  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28360093 gttaactcacgctagtgttaaatttgcgtgagttaa 28360128  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 41101215 - 41101275
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacg 236  Q
    ||||||||||||||||||||||| | | ||| |||| |||||||| |||| |||| |||||    
T  41101215 gttaactcacgctagtgttaaatctccgtgacttaactcacgttgcgtgagttaactcacg 41101275  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 5603178 - 5603128
Alignment:
Q  169 tgcatgggttaactcacgctagtgttaaatttgcatgagttaattcacgtt 219  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  5603178 tgcatgagttaactcacgctagtgttaaatttgcgtgagttaactcacgtt 5603128  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 10884499 - 10884458
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacg 217  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  10884499 gttaactcacgctagtgttaaatttgcgtgagttaactcacg 10884458  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 42883764 - 42883723
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacg 217  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  42883764 gttaactcacgcaagtgttaaatttgcatgagttaactcacg 42883723  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 5602971 - 5603047
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 192  Q
    |||||||||||||||||||||||||||||| ||||   | ||||||||| |   | ||| |||||||||||||||||    
T  5602971 tgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaactcccgcagtatgagttaactcacgctagtg 5603047  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 9862942 - 9862863
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaa 196  Q
    ||||||||||||| |||||| | ||||||||| ||| ||| |||| |||| ||   || |||||||||||||||||||||    
T  9862942 gctcattcccaaaataaatgtctaaaatgtccttacgtaacttaagtcacgttatgtgagttaactcacgctagtgttaa 9862863  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 4329081 - 4329008
Alignment:
Q  203 atgagttaattcacgttgtgtgacttaagtcacgcagaaaaaacacactaaaatccaacgtgtgttaactcacg 276  Q
    |||| |||| ||||| || ||||||||| | ||| |||||| ||||||||||| ||| |||| |||||||||||    
T  4329081 atgaattaactcacgctgcgtgacttaaattacgaagaaaacacacactaaaacccagcgtgagttaactcacg 4329008  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 13280754 - 13280794
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcac 216  Q
    ||||||||||||||||||||||| ||| ||| |||||||||    
T  13280754 gttaactcacgctagtgttaaatatgcgtgacttaattcac 13280794  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 807185 - 807124
Alignment:
Q  184 acgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaaa 245  Q
    ||||||||||||||||||| |||||||| ||||  || ||||||||||||||||| ||||||    
T  807185 acgctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaa 807124  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 14830420 - 14830465
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 162  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||    
T  14830420 gctcattcccaaagtaaatgtccaaaatgtccctacacatgttaac 14830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 31522585 - 31522539
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 163  Q
    ||||||||||||||||||||||| ||||| ||||||  |||||||||    
T  31522585 gctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaact 31522539  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 17436591 - 17436546
Alignment:
Q  117 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 162  Q
    |||| |||||||||||||||||| ||||||||||||| | ||||||    
T  17436591 gctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 14153381 - 14153409
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaat 144  Q
    |||||||||||||||||||||||||||||    
T  14153381 tgctcattcccaaagtaaatgaccaaaat 14153409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 3588370 - 3588443
Alignment:
Q  119 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 192  Q
    |||||| |||||||||||||||||||  ||||| || ||||||||| | | ||||| |||||||| ||||||||    
T  3588370 tcattctcaaagtaaatgaccaaaataaccctatatgagttaactcccgtagcatgagttaactcccgctagtg 3588443  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 3588596 - 3588546
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    |||||||||||||| ||||||||||||||| |||| | | |||||||||||    
T  3588596 tgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcac 3588546  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 1349063 - 1349124
Alignment:
Q  105 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 166  Q
    ||||| |||| |||||||||||||   ||||||||||||||||||| | | |||||||||||    
T  1349063 ccaaaagtttttgctcattcccaagtgaaatgaccaaaatgtccctgcgtgagttaactcac 1349124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 3588555 - 3588493
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 240  Q
    ||||||||||||||||||||||||||  |||||||| ||||| |  |||| | ||||||||||||    
T  3588555 gttaactcacgctagtgttaaatttg--tgagttaactcacgctacgtgagtcaagtcacgcaga 3588493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 32035816 - 32035877
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 237  Q
    |||||||||||||||||||||| ||| |||| ||||| |||| || |||| |||| ||||||    
T  32035816 gttaactcacgctagtgttaaaattgtatgacttaatccacgctgcgtgagttaactcacgc 32035877  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 15908953 - 15909021
Alignment:
Q  169 tgcatgggttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 237  Q
    |||||| ||||||||| |||||| |||| |||   ||||||||  |||||||||||| |||||||||||    
T  15908953 tgcatgagttaactcatgctagtattaattttaagtgagttaacacacgttgtgtgagttaagtcacgc 15909021  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 24974197 - 24974161
Alignment:
Q  116 tgctcattcccaaagtaaatgaccaaaatgtccctac 152  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  24974197 tgctcattcccaaagtaaatgaccgaaatgcccctac 24974161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 37999536 - 37999472
Alignment:
Q  176 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 240  Q
    |||||||||||||||||||||||  || ||| |||||||||| || |||| |||| ||| |||||    
T  37999536 gttaactcacgctagtgttaaatcagcgtgacttaattcacgctgcgtgagttaactcatgcaga 37999472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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