View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_7 (Length: 641)
Name: NF1519_high_7
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 3569208 - 3569779
Alignment:
| Q |
18 |
aaatttttgttcactttatccatttcttgagtaccatattttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569208 |
aaatttttgttcactttatccatttcttgagtaccatattttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccct |
3569307 |
T |
|
| Q |
118 |
cttttcgaggnnnnnnnntgagttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacaccccnnnnnnnggg |
217 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
3569308 |
attttcggggaaaaaaaatgagttttccaccaattcggattataaaatccaaacaaataagtagctcggattttataatctgaacaccccaaaaaaaggg |
3569407 |
T |
|
| Q |
218 |
cgtgttccttgcnnnnnnncagattataagatcgatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactgggc-------- |
309 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569408 |
tgtgttccttgctttttttcagattataagatgcatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactggaactgtatca |
3569507 |
T |
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| Q |
310 |
--acaaatattgagcttgtttgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatca |
407 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569508 |
aaacaaatattgagcttgattgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatca |
3569607 |
T |
|
| Q |
408 |
acttgctctgcaatttttattaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaa |
507 |
Q |
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| T |
3569608 |
acttgctctgcaatttttattaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaa |
3569707 |
T |
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| Q |
508 |
catgtattagaaaacgatgagttgtttgtaatagcttcataactcctaaattattttgaaatagctaactag |
579 |
Q |
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| T |
3569708 |
catgtattagaaaacgatgagttgtttgtaatagcttcataactcctaaattattttgaaatagctaactag |
3569779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 9641346 - 9641281
Alignment:
| Q |
142 |
ttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacacccc |
207 |
Q |
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| T |
9641346 |
ttccaccaattcggattctaaaatccaaataaataagtaattcgaattttataatttgaagacccc |
9641281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 29050648 - 29050599
Alignment:
| Q |
156 |
attataaaatccaaacaaataagtagttcggattttataatctgaacacc |
205 |
Q |
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| T |
29050648 |
attataaaatccaaacaaataagtagtttggattttatattatgaacacc |
29050599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 16504174 - 16504209
Alignment:
| Q |
148 |
caattcggattataaaatccaaacaaataagtagtt |
183 |
Q |
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| T |
16504174 |
caattcagattataaaatccaaacaaataagtagtt |
16504209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 54453004 - 54452960
Alignment:
| Q |
160 |
taaaatccaaacaaataagtagttcggattttataatctgaacac |
204 |
Q |
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| T |
54453004 |
taaaatccaaaaaaataagtatttcggattttataatccgaacac |
54452960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 46635406 - 46635339
Alignment:
| Q |
140 |
ttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacacccc |
207 |
Q |
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|||| ||||||||| ||||||||||||| || |||| ||||||| | ||| ||||||||||| ||||| |
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| T |
46635406 |
tttttcaccaattctgattataaaatccgaataaatgagtagtttgaattctataatctgaaaacccc |
46635339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 1941771 - 1941840
Alignment:
| Q |
136 |
tgagttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacaccc |
206 |
Q |
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| T |
1941771 |
tgagttttc-accgattcggattacaaaatccgaataagtaagtagttcggattttgtaatacgaacaccc |
1941840 |
T |
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