View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_high_70 (Length: 292)
Name: NF1519_high_70
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_70 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 31024519 - 31024251
Alignment:
| Q |
13 |
tatgtaggatgtggatttgaaggcttatcgactttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31024519 |
tatgtaggatgtggatttgaaggcttatcgactttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaa |
31024420 |
T |
|
| Q |
113 |
gggttgtcatcctttttcagttgtgtgatgatatatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31024419 |
gggttgtcatcctttttcagttgtgtgatgatatatgataacctagactgaatgtagttatattcagcacattatgacattgtttagacctttgaacttg |
31024320 |
T |
|
| Q |
213 |
ttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctctttttatgtctgt |
281 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31024319 |
ttcaattttggatatttagaacaagttgtctgataggaaattgaacatcaatcctctttttatgtctgt |
31024251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 31071494 - 31071359
Alignment:
| Q |
145 |
atatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctg |
244 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
31071494 |
atatggtaacctggactgactgtagttatattcaccacattatgatattgtttagacctttgaacttgttcaattttg--aatttagaacaagttgtctg |
31071397 |
T |
|
| Q |
245 |
ataggaaattgaacatcaatcctctttttatgtctgtg |
282 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
31071396 |
atagaaaattgaacatcaatcctcttttgatgtctgtg |
31071359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 31027966 - 31027859
Alignment:
| Q |
175 |
ttcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctcttttta |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31027966 |
ttcagcacattatgacattgttttgacctttgaacttgttcgattttggatatatagaacaagttgtttgataggaaattgaacatcaatcctcttttta |
31027867 |
T |
|
| Q |
275 |
tgtctgtg |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
31027866 |
tgtctgtg |
31027859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 31072383 - 31072332
Alignment:
| Q |
100 |
gtacatgaactaagggttgtcatcctttttcagttgtgtgatgatatatggt |
151 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31072383 |
gtacatgaactaaggtttgtcatcctttttcagttgtgtgatgatatatggt |
31072332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 31030315 - 31030278
Alignment:
| Q |
119 |
tcatcctttttcagttgtgtgatgatatatggtaacct |
156 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31030315 |
tcatcctttttcacttgtgtgatgatatatggtaacct |
31030278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 21217209 - 21217281
Alignment:
| Q |
195 |
tttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctct |
269 |
Q |
| |
|
|||||| |||| |||||||| |||||||||| |||||| ||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
21217209 |
tttagaactttgaacttgttaaattttggat--ttagaataagatgtttgagaggaaattgaacatcaatgctct |
21217281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University