View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_85 (Length: 256)

Name: NF1519_high_85
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_85
NF1519_high_85
[»] chr6 (18 HSPs)
chr6 (1-256)||(6394998-6395253)
chr6 (72-256)||(6426645-6426829)
chr6 (77-256)||(6410140-6410319)
chr6 (77-256)||(14820827-14821003)
chr6 (77-245)||(6416111-6416279)
chr6 (33-256)||(7119291-7119514)
chr6 (33-256)||(7131769-7131992)
chr6 (81-256)||(6423351-6423526)
chr6 (1-228)||(10579447-10579673)
chr6 (1-119)||(6596638-6596756)
chr6 (80-256)||(6432295-6432471)
chr6 (87-187)||(6589119-6589219)
chr6 (201-256)||(6594516-6594571)
chr6 (204-244)||(6403006-6403046)
chr6 (204-256)||(8913897-8913949)
chr6 (77-119)||(19632707-19632749)
chr6 (204-245)||(7994095-7994136)
chr6 (77-109)||(6403162-6403194)
[»] chr4 (3 HSPs)
chr4 (77-256)||(21834164-21834343)
chr4 (203-244)||(53761684-53761725)
chr4 (87-175)||(532401-532489)
[»] chr7 (2 HSPs)
chr7 (77-256)||(15091937-15092116)
chr7 (77-245)||(10614738-10614906)
[»] chr3 (3 HSPs)
chr3 (77-245)||(13470518-13470686)
chr3 (77-187)||(51764226-51764336)
chr3 (123-244)||(51113613-51113734)
[»] chr1 (3 HSPs)
chr1 (77-189)||(19468285-19468397)
chr1 (106-185)||(9586844-9586923)
chr1 (77-185)||(9581276-9581384)
[»] chr5 (1 HSPs)
chr5 (141-189)||(41889401-41889449)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6395253 - 6394998
Alignment:
Q  1 tcgttagaaactgtcctatgcttaccgagattaaaatgcaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactc 100  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395253 tcgttagaaactgtcctttgcttaccgagattaaaatggaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactc 6395154  T
Q  101 tctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctacttgatttgacacgttgctca 200  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6395153 tctctatttgggtacaaattactggttaatagatgaaataatcataatgtttacttccattttccccaatttacagctacttgatttgacacgttgctca 6395054  T
Q  201 caaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395053 caaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 6394998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 6426829 - 6426645
Alignment:
Q  72 cattctggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatt 171  Q
    |||||||||||||||||||| || || ||||||||| |||||||||||   |||||||  |||||||| |||||||||| | |||||||||||||| |||    
T  6426829 cattctggtgtataccctcaattgaagtctctctatctgggtagaaattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatt 6426730  T
Q  172 tacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    ||||||||||||||||||    ||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6426729 tacagctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgttgtaagcttaaacattt 6426645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 256
Target Start/End: Complemental strand, 6410319 - 6410140
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| ||||||||||||| |   |||   | |||||  ||||||||||||||  ||||| |||||||||| ||| |||||||     
T  6410319 tggtgtataccctcaattaaagtctctctatttggattacaatacatcgttaagtgatgaaataatcattttgtttgcttccatttttcccaatttacaa 6410220  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    ||||||||||||||  |||||   |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  6410219 ctacttgatttgacgggttgccagcaaatatctgaaggtatttgtcaagttttacagaaatgttgtaagcttaagcattt 6410140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 256
Target Start/End: Complemental strand, 14821003 - 14820827
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggt-agaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttaca 175  Q
    ||||||||||||||| || || ||||||||||||||| | || ||| |||||||  ||||||||||||||  ||| | |||||||||||||  ||||| |    
T  14821003 tggtgtataccctcaattgaagtctctctatttgggtcacaattca-tggttaaatgatgaaataatcattttgtatgcttccattttcccaaatttaaa 14820905  T
Q  176 gctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    |||||||||||| ||| | | |||  |  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  14820904 gctacttgattt-acaagattctccta--tatctgaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacattt 14820827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 6416279 - 6416111
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| |||||||||||||| | |||| | |||||||  ||||||   |||||||||||| ||||||  |||||| |||| |||    
T  6416279 tggtgtataccctcaattaaagtctctctatttgggaaaaaataaatggttaagcgatgaaggtatcataatgttttcttccaacttccccaatttgcag 6416180  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaag 245  Q
    || ||||||||||  |||||    |   |||||||||||||||||||||||||||||| ||||||||||    
T  6416179 ctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgttgtaag 6416111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 256
Target Start/End: Complemental strand, 7119514 - 7119291
Alignment:
Q  33 aaaatgcaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatag 132  Q
    |||||| || |||||  ||| |||||||||| ||| ||| ||||| ||||||| ||||||||||| ||||||||||| |||||||||    ||||||  |    
T  7119514 aaaatggaatacacagctatagggaaagagagtgtagggaattctagtgtatatcctcagttaaagtctctctatttaggtagaaatttacggttaactg 7119415  T
Q  133 atgaaataatcataatgtttacttccattttcccctatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaa 232  Q
    |||||| |||  |||| ||  ||||| |||||||| ||||||| || ||||||||||    ||||    | ||||||||||||||||||||||||||||     
T  7119414 atgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaag 7119315  T
Q  233 gaaatgttgtaagcttaaacattt 256  Q
    || ||||| |||| ||||||||||    
T  7119314 gagatgttctaagattaaacattt 7119291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 256
Target Start/End: Complemental strand, 7131992 - 7131769
Alignment:
Q  33 aaaatgcaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatag 132  Q
    |||||| || |||||  ||| |||||||||| ||| ||| ||||| ||||||| ||||||||||| ||||||||||| |||||||||    ||||||  |    
T  7131992 aaaatggaatacacagctatagggaaagagagtgtagggaattctagtgtatatcctcagttaaagtctctctatttaggtagaaatttacggttaactg 7131893  T
Q  133 atgaaataatcataatgtttacttccattttcccctatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaa 232  Q
    |||||| |||  |||| ||  ||||| |||||||| ||||||| || ||||||||||    ||||    | ||||||||||||||||||||||||||||     
T  7131892 atgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaag 7131793  T
Q  233 gaaatgttgtaagcttaaacattt 256  Q
    || ||||| |||| ||||||||||    
T  7131792 gagatgttctaagattaaacattt 7131769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 6423526 - 6423351
Alignment:
Q  81 gtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctac 180  Q
    ||||||||||| ||||| |||||||||||||||   | |   |||||||  |||||||| |||||||||||| |||||||||||||  ||||| | ||||    
T  6423526 gtataccctcaattaaagtctctctatttgggttacacttcgtggttaagtgatgaaatcatcataatgtttgcttccattttccctaatttaaaactac 6423427  T
Q  181 ttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    |||||||||   |||||   ||||||| ||| ||||||||||| ||||||  ||||||| || |||||||||||||    
T  6423426 ttgatttgaagggttgccatcaaatatttgatggtatttgtcatgttttacggaaatgtcgtgagcttaaacattt 6423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10579447 - 10579673
Alignment:
Q  1 tcgttagaaactgtcctatgcttaccgagattaaaatgcaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactc 100  Q
    |||| ||||| ||||||  |||||  ||||| |||||| ||||||||  |||| ||| | ||| ||| | | ||||||||||||||| ||| ||||| ||    
T  10579447 tcgtaagaaattgtccttcgcttagtgagatcaaaatggaaaacacagctatttggacaaagagtgtagagaattctggtgtatacc-tcaattaaaatc 10579545  T
Q  101 tctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctacttgatttgacacgttgctca 200  Q
    |||||||||||||||||||   | ||||   |||||||| || ||||||||  ||||| |||||||| |||| ||||| ||||||||||    ||||  |    
T  10579546 tctctatttgggtagaaattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcagctgcttgatttgaatacttgcgaa 10579645  T
Q  201 caaatatctgaaggtatttgtcaagttt 228  Q
     | |||||||||||||||| ||||||||    
T  10579646 tacatatctgaaggtatttttcaagttt 10579673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6596638 - 6596756
Alignment:
Q  1 tcgttagaaactgtcctatgcttaccgagattaaaatgcaaaacacatgtattgggaaagagactgttgggcattctggtgtataccctcagttaaactc 100  Q
    |||| ||||| ||||||  |||||  ||||| |||||||||||||||  ||||||||  |||| ||| | | |||||| |||||||||||| ||||| ||    
T  6596638 tcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaattctgatgtataccctcaattaaagtc 6596737  T
Q  101 tctctatttgggtagaaat 119  Q
    |||||||||||||||||||    
T  6596738 tctctatttgggtagaaat 6596756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 6432471 - 6432295
Alignment:
Q  80 tgtataccctcagttaaactctctctatttgggt-agaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagct 178  Q
    |||||||||||||||||| ||||||||||||||| | || ||| |||||||   ||||||  |||||||||||| |||||||||||||| |||| || |     
T  6432471 tgtataccctcagttaaagtctctctatttgggtcacaattca-tggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaaca 6432373  T
Q  179 acttgatttgacacgttgctcacaa---atatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
     |||||||||   ||||| |  ||    |||  ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  6432372 tcttgatttg---cgttggtgtcatcgtataaatgaaggtatttgtcaagttttaaggagatgttgtaaacttaaacattt 6432295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 6589119 - 6589219
Alignment:
Q  87 cctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctacttgatt 186  Q
    ||||| ||||| |||||||||||||||| ||||   |||||||  |||| ||  |||||||||||| |||||||||||||| ||||| || | |||||||    
T  6589119 cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt 6589218  T
Q  187 t 187  Q
    |    
T  6589219 t 6589219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 6594516 - 6594571
Alignment:
Q  201 caaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    ||||||||||||||||||||||||||||||| || ||||| |||| ||| ||||||    
T  6594516 caaatatctgaaggtatttgtcaagttttaaggagatgttataagattacacattt 6594571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 6403046 - 6403006
Alignment:
Q  204 atatctgaaggtatttgtcaagttttaaagaaatgttgtaa 244  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  6403046 atatctgaaggtatttgtcaagttttaaggagatgttgtaa 6403006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 8913897 - 8913949
Alignment:
Q  204 atatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    |||||| |||||||||||||||||||||  | |||||||||| ||||||||||    
T  8913897 atatctaaaggtatttgtcaagttttaagaagatgttgtaagattaaacattt 8913949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 19632749 - 19632707
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaat 119  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||    
T  19632749 tggtgtataccctcaattaaagtctctctatttgggtcgaaat 19632707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 7994095 - 7994136
Alignment:
Q  204 atatctgaaggtatttgtcaagttttaaagaaatgttgtaag 245  Q
    |||||||||||||||||| | ||||||| |||||||||||||    
T  7994095 atatctgaaggtatttgttacgttttaaggaaatgttgtaag 7994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 6403194 - 6403162
Alignment:
Q  77 tggtgtataccctcagttaaactctctctattt 109  Q
    ||||||||||||||||||||| |||||||||||    
T  6403194 tggtgtataccctcagttaaagtctctctattt 6403162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 21834164 - 21834343
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    |||||| |||||||| ||||| ||||||| ||||||  | |||   |||||||  ||||||| ||||||||||||| |||| ||||||||| ||||||||    
T  21834164 tggtgtgtaccctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacag 21834263  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    || |||||||||||   || | |||| ||||| |||||||||||  ||||||||| ||||||||||||| |||| |||||    
T  21834264 ctgcttgatttgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcattt 21834343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 53761684 - 53761725
Alignment:
Q  203 aatatctgaaggtatttgtcaagttttaaagaaatgttgtaa 244  Q
    ||||||| ||||||||||||||||||||| || |||||||||    
T  53761684 aatatctaaaggtatttgtcaagttttaaggagatgttgtaa 53761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 532489 - 532401
Alignment:
Q  87 cctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttaca 175  Q
    ||||||||||| |||||  |||||||||  | ||| ||||| | ||||||||  || ||||||||| | |||||||||||| |||||||    
T  532489 cctcagttaaagtctctaaatttgggtatgagtcaatggttgagagatgaaagcattataatgtttgcatccattttccccaatttaca 532401  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 15091937 - 15092116
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| ||||||||||||| |   ||| || ||||||  |||||||| |||| |||  || |||||||||||||| | ||| ||    
T  15091937 tggtgtataccctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaacttagag 15092036  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacattt 256  Q
    ||||||||||||   | |||||   | |||||| ||||||||| ||||||||||| |||||||| |||||||||||||||    
T  15092037 ctacttgatttgggtcattgctataacatatctcaaggtatttctcaagttttaaggaaatgttataagcttaaacattt 15092116  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 10614906 - 10614738
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| |||||||||||||| | |||||| |||||||  ||||||   || |||| |||| |||||| ||||||| |||| ||     
T  10614906 tggtgtataccctcaattaaagtctctctatttgggaaaaaatcagtggttaagcgatgaaggcattataaagtttgcttccaatttccccaatttgcaa 10614807  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaag 245  Q
    || ||||||||||  ||||||   |   ||| ||||||||||||||||||||||| || ||||||||||    
T  10614806 ctgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaag 10614738  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 13470518 - 13470686
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| |||||||||||||| | |||||| |||||||  ||||||   |||||||||||| |||||| ||||||| |||| |||    
T  13470518 tggtgtataccctcaattaaagtctctctatttgggaaaaaatcaatggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcag 13470617  T
Q  177 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaag 245  Q
    || ||||||||||   |||||   |   ||||  ||||||||||||||||||||| || ||||||||||    
T  13470618 ctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgttgtaag 13470686  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 51764226 - 51764336
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    ||||||||||||||| ||||| ||||||||| |||||  ||||   |||||||  |||||||  |||||||||||| |||||||||||||| |||| |||    
T  51764226 tggtgtataccctcaattaaagtctctctatctgggtgaaaatacatggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcag 51764325  T
Q  177 ctacttgattt 187  Q
    || ||||||||    
T  51764326 ctgcttgattt 51764336  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 51113613 - 51113734
Alignment:
Q  123 tggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtc 222  Q
    ||||||| |||||| |  ||||||||| || |||||||||||||| || | ||||| |||||||| || | |||||   | ||||| |||||||||||||    
T  51113613 tggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttgtc 51113712  T
Q  223 aagttttaaagaaatgttgtaa 244  Q
    |||||||||||| |||||||||    
T  51113713 aagttttaaagagatgttgtaa 51113734  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 19468285 - 19468397
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggt-agaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttaca 175  Q
    |||||||| |||||| ||||| | |||||| |||| | |||| ||| |||||||  |||||||  |||||||||||| |||||||||| ||| |||| ||    
T  19468285 tggtgtattccctcaattaaagtatctctacttggctgagaattca-tggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgca 19468383  T
Q  176 gctacttgatttga 189  Q
    ||| ||||||||||    
T  19468384 gctgcttgatttga 19468397  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 9586923 - 9586844
Alignment:
Q  106 atttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacagctacttgat 185  Q
    |||||||| | ||||| ||||||| |||| |||  |||||||||||| |||| ||||||||| |||| ||||| ||||||    
T  9586923 atttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 9581384 - 9581276
Alignment:
Q  77 tggtgtataccctcagttaaactctctctatttgggtagaaatcactggttaatagatgaaataatcataatgtttacttccattttcccctatttacag 176  Q
    |||||||  |||||| ||||| |||||  ||||||||   ||||| || |||| |||| |||  |||||||||||| |||| ||||||||| |||| |||    
T  9581384 tggtgtaagccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcag 9581285  T
Q  177 ctacttgat 185  Q
    || ||||||    
T  9581284 ctgcttgat 9581276  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 41889401 - 41889449
Alignment:
Q  141 atcataatgtttacttccattttcccctatttacagctacttgatttga 189  Q
    |||||||||||| |||||||||||||  |||| ||||||||||||||||    
T  41889401 atcataatgtttgcttccattttccctaatttgcagctacttgatttga 41889449  T

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