View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_88 (Length: 250)
Name: NF1519_high_88
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_88 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 25002767 - 25002979
Alignment:
| Q |
20 |
aagaaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaacttcttctccctcttctccaccacaacaga |
119 |
Q |
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| T |
25002767 |
aagaaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaacttcttctccctcttctccaccacaacaga |
25002866 |
T |
|
| Q |
120 |
atttggataacgttgttccatgcttcaatccaaccattaaccgccctcgatgcctcgctagaaagaaactctttgctgttgcaccagtttttactgaaca |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||| |
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| T |
25002867 |
atttggataacgttgttccatgcttcaacccaaccattaaccgccctcgatgcctcgctagaaagaaacttttcgctgttacacctgtttttactgaaca |
25002966 |
T |
|
| Q |
220 |
cacagacacatat |
232 |
Q |
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||||||||||||| |
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| T |
25002967 |
cacagacacatat |
25002979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 24998791 - 24998580
Alignment:
| Q |
20 |
aagaaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctct-caactctcaccaacttcttctccctc---ttctccaccacaa |
115 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||| |||||| ||| |||| || ||||||| ||| | |
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| T |
24998791 |
aagaaaatcaaagccaacaggaagctgcaaaatcaaatcaacttattagaactctcaacaacaa-caccaatttcacctccttccttttctccatcacca |
24998693 |
T |
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| Q |
116 |
cagaatttggataacgttgttccatgcttcaatccaaccattaaccgccctcgatgcctcgctagaaagaaactctttgctgttgcaccagtttttactg |
215 |
Q |
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|||||||||||||| || || || |||||| |||| ||| ||||||||||||| ||||| ||||| ||||||||||| || ||| |||| |||||||||| |
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| T |
24998692 |
cagaatttggataatgtcgtaccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactg |
24998593 |
T |
|
| Q |
216 |
aacacacagacac |
228 |
Q |
| |
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||||||||||||| |
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| T |
24998592 |
aacacacagacac |
24998580 |
T |
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