View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_high_92 (Length: 249)

Name: NF1519_high_92
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_high_92
NF1519_high_92
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-91)||(353196-353282)
[»] chr8 (6 HSPs)
chr8 (1-96)||(588556-588651)
chr8 (1-96)||(625271-625366)
chr8 (31-72)||(14442596-14442636)
chr8 (45-80)||(10659195-10659230)
chr8 (45-90)||(1029736-1029781)
chr8 (43-80)||(11954594-11954631)
[»] chr2 (14 HSPs)
chr2 (1-80)||(20105365-20105442)
chr2 (43-91)||(18482107-18482155)
chr2 (43-80)||(5136202-5136239)
chr2 (43-91)||(39228902-39228950)
chr2 (44-99)||(4730695-4730750)
chr2 (45-80)||(9848124-9848159)
chr2 (45-91)||(12419537-12419583)
chr2 (45-91)||(12431597-12431643)
chr2 (48-89)||(38002026-38002067)
chr2 (98-134)||(27185798-27185834)
chr2 (98-134)||(27835340-27835376)
chr2 (32-80)||(36254598-36254645)
chr2 (96-160)||(38001835-38001899)
chr2 (5-41)||(39229063-39229099)
[»] chr4 (3 HSPs)
chr4 (159-204)||(20626870-20626915)
chr4 (43-91)||(1745439-1745487)
chr4 (1-80)||(44136825-44136904)
[»] chr7 (5 HSPs)
chr7 (49-91)||(27900341-27900383)
chr7 (43-91)||(10019747-10019795)
chr7 (45-80)||(46611516-46611551)
chr7 (47-91)||(10623354-10623398)
chr7 (47-91)||(28302155-28302199)
[»] chr6 (3 HSPs)
chr6 (45-87)||(6257236-6257278)
chr6 (45-91)||(8210014-8210060)
chr6 (49-91)||(29032702-29032744)
[»] chr1 (9 HSPs)
chr1 (11-80)||(23777055-23777124)
chr1 (13-80)||(50959487-50959558)
chr1 (45-80)||(26925118-26925153)
chr1 (45-80)||(33323910-33323945)
chr1 (11-80)||(18628932-18629002)
chr1 (45-91)||(48563258-48563304)
chr1 (47-99)||(2688447-2688499)
chr1 (48-80)||(16256488-16256520)
chr1 (11-80)||(18650407-18650478)
[»] chr3 (1 HSPs)
chr3 (12-80)||(47005804-47005874)
[»] scaffold0914 (1 HSPs)
scaffold0914 (49-82)||(809-842)


Alignment Details
Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 353196 - 353282
Alignment:
Q  5 ctgaacacaacagcaagcataaaa-ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    ||||| ||| ||||||||||| || ||||||||||||| | |||||||||||||||||||||||||||| |||||||||  |||||||    
T  353196 ctgaatacaccagcaagcatacaagctctttcgagcat-acacgcgtaagaactcagatcgagggatgagtccaatatgtcagtaacc 353282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 588651 - 588556
Alignment:
Q  1 ctccctgaacacaacagcaagcataaaa-ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaatatgctagtaaccgaaca 96  Q
    |||| |||||||| |||||||||||||| ||||||||||||| |||| | |||||||||| ||||||  |||| |||||| || |||||||||||||    
T  588651 ctccttgaacacaccagcaagcataaaagctctttcgagcat-agacacataagaactcatatcgagtaatgagtccaatttgttagtaaccgaaca 588556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 625271 - 625366
Alignment:
Q  1 ctccctgaacacaacagcaagcataaaa-ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaatatgctagtaaccgaaca 96  Q
    |||| |||||||| |||||||||||||| ||||||||||||| |||| | |||||||||| ||||||  |||| |||||| || |||||||||||||    
T  625271 ctccttgaacacaccagcaagcataaaagctctttcgagcat-agacacataagaactcatatcgagtaatgagtccaatgtgttagtaaccgaaca 625366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 14442596 - 14442636
Alignment:
Q  31 ctttcgagcattagacgcgtaagaactcagatcgagggatga 72  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  14442596 ctttcgagcatta-acgcgtaagaactcagatcgagggatga 14442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 10659195 - 10659230
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||| |||||||    
T  10659195 acgcgtaagaactcagatcgagggatgagtccaata 10659230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 1029736 - 1029781
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagtaac 90  Q
    |||||||||||||||||||| ||||||| ||||||| | |||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac 1029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 11954594 - 11954631
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  11954594 agacgcgtaagaactcagatccagggatgagtccaata 11954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20105442 - 20105365
Alignment:
Q  1 ctccctgaacacaacagcaagcataaaactctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||||| | |||||||||||||  |||||||||||   ||||||||||||||||||||||| ||||| |||||||    
T  20105442 ctccctgaacaaagcagcaagcataaagatctttcgagcac--gacgcgtaagaactcagatcgagtgatgagtccaata 20105365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 18482107 - 18482155
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||||||||||||| ||||||||| || |||||    
T  18482107 agacgcgtaagaactcagatcgagggatgagtccaatatgttaataacc 18482155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 5136239 - 5136202
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||||| |||||||    
T  5136239 agacgcgtaagaactcagatcgagggatgagtccaata 5136202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 39228950 - 39228902
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||||||||||||| || |||| | ||||||||    
T  39228950 agacgcgtaagaactcagatcgagggatgagtcgaatacgttagtaacc 39228902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 4730750 - 4730695
Alignment:
Q  44 gacgcgtaagaactcagatcgagggatgattccaatatgctagtaaccgaacagac 99  Q
    ||||||| ||||||||||||| ||||||| ||||||| | |||||||| |||||||    
T  4730750 gacgcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagac 4730695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 9848159 - 9848124
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||| |||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaata 9848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 12419537 - 12419583
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    ||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaacc 12419583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 12431597 - 12431643
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    ||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaacc 12431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 38002067 - 38002026
Alignment:
Q  48 cgtaagaactcagatcgagggatgattccaatatgctagtaa 89  Q
    ||||||||||||||||||||||||| ||||||| | ||||||    
T  38002067 cgtaagaactcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 27185834 - 27185798
Alignment:
Q  98 acgcgtatgaacccagatcgaggtatgagtccaacac 134  Q
    |||||||||||| |||||||||| |||||||||||||    
T  27185834 acgcgtatgaactcagatcgagggatgagtccaacac 27185798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 27835376 - 27835340
Alignment:
Q  98 acgcgtatgaacccagatcgaggtatgagtccaacac 134  Q
    |||||||||||| |||||||||| |||||||||||||    
T  27835376 acgcgtatgaactcagatcgagggatgagtccaacac 27835340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 36254645 - 36254598
Alignment:
Q  32 tttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||| ||||| ||| |||||||||||||||||||||||| |||||||    
T  36254645 tttcgaacatta-acgtgtaagaactcagatcgagggatgagtccaata 36254598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 38001899 - 38001835
Alignment:
Q  96 agacgcgtatgaacccagatcgaggtatgagtccaacactttataaatcaaacaactcttttggg 160  Q
    |||||||  |||||||| ||||||| ||||||||||||  ||||||| |||||| | ||||||||    
T  38001899 agacgcgattgaacccatatcgagggatgagtccaacatgttataaaacaaacagcccttttggg 38001835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 39229099 - 39229063
Alignment:
Q  5 ctgaacacaacagcaagcataaaactctttcgagcat 41  Q
    ||||||| | |||||||||||||||||||||||||||    
T  39229099 ctgaacaaagcagcaagcataaaactctttcgagcat 39229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 20626870 - 20626915
Alignment:
Q  159 gggttaaaagaaccagaccctttagggtttacgtaactgaaccacc 204  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  20626870 gggttaaaagaaccagaccctttcgggtttacgaaactgaaccacc 20626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 1745487 - 1745439
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||| ||||||||| ||||||| | ||||||||    
T  1745487 agacgcgtaagaactcagattgagggatgagtccaatacgttagtaacc 1745439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44136904 - 44136825
Alignment:
Q  1 ctccctgaacacaacagcaagcataaaa-ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||| ||| ||||||||| | || | ||||||||||| | |||||||||||||| ||||||||||||| |||||||    
T  44136904 ctccctgaatacaccagcaagcaaagaagccctttcgagcat-acacgcgtaagaactcggatcgagggatgagtccaata 44136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 27900341 - 27900383
Alignment:
Q  49 gtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  27900341 gtaagaactcagatcgagggatgagtccaatatgttagtaacc 27900383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 10019747 - 10019795
Alignment:
Q  43 agacgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    ||||||||||||||||| |||||||||||| ||||||| | ||||||||    
T  10019747 agacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaacc 10019795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 46611516 - 46611551
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||| |||||||    
T  46611516 acgcgtaagaactcagatcgagggatgagtccaata 46611551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 10623398 - 10623354
Alignment:
Q  47 gcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||| ||||||||||||||||||||| ||||||| | ||||||||    
T  10623398 gcgttagaactcagatcgagggatgagtccaatacgttagtaacc 10623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 28302155 - 28302199
Alignment:
Q  47 gcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||| ||||||||||||||| ||||||| | ||||||||    
T  28302155 gcgtaagaacacagatcgagggatgagtccaatacgttagtaacc 28302199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 6257278 - 6257236
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagt 87  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  6257278 acgcgtaagaactcagatcgagggatgagtccaatatgttagt 6257236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 8210060 - 8210014
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaacc 8210014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 29032744 - 29032702
Alignment:
Q  49 gtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    |||||||||||||||||||||||| ||||||| | ||||||||    
T  29032744 gtaagaactcagatcgagggatgagtccaatacgttagtaacc 29032702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 23777124 - 23777055
Alignment:
Q  11 acaacagcaagcataaaactctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||  |||||||| ||    ||||||| |||||||||||||||||||| |||||||    
T  23777124 acaacagcaagcataaagttctttcgaacaaacaacgcgtaggaactcagatcgagggatgagtccaata 23777055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 50959487 - 50959558
Alignment:
Q  13 aacagcaagcataaaa---ctctttcgagcattaga-cgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||||||||||   ||||| |||||| || | ||||||||||||||||||||||||||| |||||||    
T  50959487 aacagcaagcataaaaaagctcttccgagcaatacaacgcgtaagaactcagatcgagggatgagtccaata 50959558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 26925118 - 26925153
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||| |||||||    
T  26925118 acgcgtaagaactcagatcgagggatgagtccaata 26925153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 33323945 - 33323910
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||||||||||||||||||||||||| |||||||    
T  33323945 acgcgtaagaactcagatcgagggatgagtccaata 33323910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 18628932 - 18629002
Alignment:
Q  11 acaacagcaagcataaaa-ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    |||||| ||||||||||| ||||||||| ||    |||||||||||||||||| ||||||||| |||||||    
T  18628932 acaacaacaagcataaaagctctttcgatcaaacaacgcgtaagaactcagattgagggatgagtccaata 18629002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 48563304 - 48563258
Alignment:
Q  45 acgcgtaagaactcagatcgagggatgattccaatatgctagtaacc 91  Q
    ||||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  48563304 acgcgtaagaacttagatcgtgggatgagtccaatatgttagtaacc 48563258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 2688447 - 2688499
Alignment:
Q  47 gcgtaagaactcagatcgagggatgattccaatatgctagtaaccgaacagac 99  Q
    |||| ||||||||||||| ||||||| ||||||| | |||||||| |||||||    
T  2688447 gcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagac 2688499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 16256520 - 16256488
Alignment:
Q  48 cgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||||||||||||||||||| |||||||    
T  16256520 cgtaagaactcagatcgagggatgagtccaata 16256488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 18650407 - 18650478
Alignment:
Q  11 acaacagcaagcataaaa--ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||||||||||||||||  ||||||||||||    | ||||||||||| ||||| |||||||| |||||||    
T  18650407 acaacagcaagcataaaaagctctttcgagcaagcaatgcgtaagaactaagatcaagggatgagtccaata 18650478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 47005804 - 47005874
Alignment:
Q  12 caacagcaagcataaaa--ctctttcgagcattagacgcgtaagaactcagatcgagggatgattccaata 80  Q
    ||||| |||||||||||  ||||||||||||    ||||||||||||| |||||||||||||| |||||||    
T  47005804 caacaacaagcataaaaagctctttcgagcaagcaacgcgtaagaactaagatcgagggatgagtccaata 47005874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 809 - 842
Alignment:
Q  49 gtaagaactcagatcgagggatgattccaatatg 82  Q
    |||||||||||||||||||||||| |||||||||    
T  809 gtaagaactcagatcgagggatgagtccaatatg 842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University