View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_94 (Length: 248)
Name: NF1519_high_94
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_94 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 22776820 - 22776603
Alignment:
| Q |
14 |
agagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctt |
113 |
Q |
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| T |
22776820 |
agagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctt |
22776721 |
T |
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| Q |
114 |
taaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataa |
213 |
Q |
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| T |
22776720 |
taaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataa |
22776621 |
T |
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| Q |
214 |
tgtggttagagttctttc |
231 |
Q |
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| T |
22776620 |
tgtggttagagttctttc |
22776603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 40945366 - 40945217
Alignment:
| Q |
82 |
gtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatg |
181 |
Q |
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|||||||||||| |||||||| || || || || ||||| |||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| ||||| |
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| T |
40945366 |
gtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatg |
40945267 |
T |
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| Q |
182 |
ggagatgatgatactgtatttatggttgataatgtggttagagttctttc |
231 |
Q |
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| T |
40945266 |
ggagatgatgatactgtttttgttgttgataatgttgttagaattctttc |
40945217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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