View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_96 (Length: 243)
Name: NF1519_high_96
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_96 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39370108 - 39369911
Alignment:
| Q |
1 |
cttgggttccaagcaggatcaactacaaacacacgatctgctcttgtaagtgtcaatcctatactaccaaccttagatgtcaagagaaatattggaggtc |
100 |
Q |
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| T |
39370108 |
cttgggttccaatcaggatcaactacaataacacgatctgctcttgtaagtgtcaatcctataccaccaaccttagatgtcaagagaaatattggaggtc |
39370009 |
T |
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| Q |
101 |
cagcaacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
198 |
Q |
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| T |
39370008 |
cagcaacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
39369911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 39356120 - 39355889
Alignment:
| Q |
4 |
gggttccaagcaggatcaactacaaacacacgatctgctcttgtaagtgtcaatcctatactaccaaccttagatgtcaagagaaatattggaggtccag |
103 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| || |||||| | |||||||| ||||||||||||| |||| |
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| T |
39356120 |
gggttccaagcaggatcaacaacaatcacacgatctgctcttgtaagtgtcagtcctaaaccaccaacttgagatgtcagcagaaatattggagctccaa |
39356021 |
T |
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| Q |
104 |
caacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatacttacatc |
203 |
Q |
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|| ||||||| ||||||||||||||||||| ||||||||| ||||||| | ||| |||||||||||| || ||| ||||||||||| ||||||||||| |
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| T |
39356020 |
caccatcttgaaaatcctgaaatcaaattaacagttagacgaggaaaaatgacaattggaggatttaaaaccgttactgaatatgcaaaatacttacatc |
39355921 |
T |
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| Q |
204 |
aacaaatctttttctgtcacaggatattgttg |
235 |
Q |
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||||| | || |||||||||| ||| |||||| |
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| T |
39355920 |
aacaatttttattctgtcacatgattttgttg |
39355889 |
T |
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