View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_high_97 (Length: 242)
Name: NF1519_high_97
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_high_97 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20772333 - 20772098
Alignment:
| Q |
1 |
tagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcaagcatattttgacaacagatgaggtggcatatgtcaactatgggaattcatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20772333 |
tagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcatgcttattttgacaacagatgaggtggcatatgtcaactatgggaattcatag |
20772234 |
T |
|
| Q |
101 |
atgccactcatataatatcttgaaaattgctgtatacacttctaacaaggctgaaacacaccnnnnnnngacgtatatgttaatctacagttatctgccg |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
20772233 |
atgccactcatataatatcttgaaaatttctgtatacacttttaacaaggttgaaacacaccaaaaaaagacgtaaatgttaatctacagttatctgccg |
20772134 |
T |
|
| Q |
201 |
cggttaaaatccatcgacaattaactgccgatctct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
20772133 |
cggttaaaatccatcgacaattaactgccgatctct |
20772098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 42456824 - 42456861
Alignment:
| Q |
119 |
cttgaaaattgctgtatacacttctaacaaggctgaaa |
156 |
Q |
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| T |
42456824 |
cttgaaaattgctgtatacacttctaacaaggctgaaa |
42456861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 27249739 - 27249780
Alignment:
| Q |
121 |
tgaaaattgctgtatacacttctaacaaggctgaaacacacc |
162 |
Q |
| |
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| T |
27249739 |
tgaaaattgttgtatacacttcaaacaaggctgaaacacacc |
27249780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 29923843 - 29923953
Alignment:
| Q |
123 |
aaaattgctgtatacacttctaacaaggctgaaacacaccnnnnnnngacgtatatgttaatctacagttatctgccgc-ggttaaaatccatcgacaat |
221 |
Q |
| |
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||||||| ||||||||| | | | |||||||||||||| | ||| || ||||| ||| ||||||| ||||||| |||||||||||||| |||| |
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| T |
29923843 |
aaaattgttgtatacacatgtgataaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaat |
29923942 |
T |
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| Q |
222 |
taactgccgat |
232 |
Q |
| |
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||||||||||| |
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| T |
29923943 |
taactgccgat |
29923953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 25271903 - 25271863
Alignment:
| Q |
120 |
ttgaaaattgctgtatacacttctaacaaggctgaaacaca |
160 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||| |
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|
| T |
25271903 |
ttgaaaattgttgtttacacttcaaacaaggctgaaacaca |
25271863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 7682834 - 7682797
Alignment:
| Q |
123 |
aaaattgctgtatacacttctaacaaggctgaaacaca |
160 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
7682834 |
aaaattgctgtttacacttctaataaggctgaaacaca |
7682797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 51381110 - 51381070
Alignment:
| Q |
122 |
gaaaattgctgtatacacttctaacaaggctgaaacacacc |
162 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
51381110 |
gaaaattgccgtttacacttcaaacaaggctgaaacacacc |
51381070 |
T |
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